Locus 4364

Sequence ID 2L_DroMel_CAF1
Location 12,550,930 – 12,551,024
Length 94
Max. P 0.970957
window6875

overview

Window 5

Location 12,550,930 – 12,551,024
Length 94
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 87.45
Mean single sequence MFE -21.10
Consensus MFE -19.38
Energy contribution -19.46
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.92
SVM decision value 1.67
SVM RNA-class probability 0.970957
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12550930 94 - 22407834
------------UUUCAUUUUGAUCCCAAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUA----UGAUUAUGUGCACGCCCUCA
------------.((((((........))))))(((((....((........))((((((((((.........))))))))))...----......)))))......... ( -21.20)
>DroSec_CAF1 122995 98 - 1
------------UUUCAUUUUGCUCCCAAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUAUGUAUGAUUAUGUGCACGCCCUCA
------------.((((((........))))))(((((....(((..((..((.((((((((((.........)))))))))).)).))..)))..)))))......... ( -23.00)
>DroSim_CAF1 125834 93 - 1
------------UUUCAUUUUGUUCCCAAUGAAGCACAAUUUGUUGCGCCUU-CGUGUUGCAAUCAUUCAACAAUUGCGACACUUA----UGAUUAUGUGCACGCCCUCA
------------.((((((........))))))(((((....(.....)...-.((((((((((.........))))))))))...----......)))))......... ( -19.50)
>DroEre_CAF1 122057 94 - 1
------------GUUCAUGCUUGCCCCCAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUA----UGACUAUGUGCACGCCCUCA
------------.((((((........))))))(((((....((........))((((((((((.........))))))))))...----......)))))......... ( -23.00)
>DroYak_CAF1 126618 106 - 1
UCCAAGCAACUAUUUCAUGUCGAUCCCUAUGAAACACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAACUGCGACACUCA----UGAUUAUGUGCACGCCCUCA
.....(((......(((((...........(.((((.....)))).).......((((((((.............)))))))).))----))).....)))......... ( -18.82)
>consensus
____________UUUCAUUUUGAUCCCAAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUA____UGAUUAUGUGCACGCCCUCA
.............((((((........))))))(((((....((........))((((((((((.........)))))))))).............)))))......... (-19.38 = -19.46 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:02 2006