Locus 4362

Sequence ID 2L_DroMel_CAF1
Location 12,540,555 – 12,540,652
Length 97
Max. P 0.945512
window6871

overview

Window 1

Location 12,540,555 – 12,540,652
Length 97
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 89.39
Mean single sequence MFE -24.14
Consensus MFE -22.88
Energy contribution -22.60
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.95
SVM decision value 1.35
SVM RNA-class probability 0.945512
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12540555 97 + 22407834
CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUACAGUUGGAU---GAUUCGUUUUCGAAAGUAGGCUUGUUGCUUA----AACGUGGUUUCAAAA
..(((((((.(((.(((((((......))))))).)))...)))))))((.---....((((..(....)(((((.....)))))----)))).....)).... ( -25.10)
>DroSec_CAF1 112850 94 + 1
CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU---GUUUCGUUUUCGAAAGUAGGCUU---GCUUG----AAAGUGGUUUCUAAA
..(((((((.(((.(((((((......))))))).)))...)))))))((.---...(((((((((((((....)))---..)))----)))))))..)).... ( -23.20)
>DroSim_CAF1 115441 94 + 1
CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU---GUUUCGUUUUCGAAAGUAGGCUU---GCUUG----AAAGUGGUUUUUAAA
..(((((((.(((.(((((((......))))))).)))...)))))))...---...(((((((((((((....)))---..)))----)))))))........ ( -22.90)
>DroEre_CAF1 111130 93 + 1
CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU---GAUUCGUUUUCGAAAGUAGGCUU---GCCUG-----AUGUGGUUCCAGAA
..(((((((.(((.(((((((......))))))).)))...)))))))...---..((((....))))....((...---(((..-----....))).)).... ( -24.80)
>DroYak_CAF1 115469 101 + 1
CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCACUUUCUGCAGUUGGAUGAUGAUUCGUUUUCGAAAGUAGGCUU---GCUUGGCUUGGAGUAGUUUCAGAA
..(((((((.....(((((((......))))))).......)))))))..(((..((((.....(....)((((((.---....))))))))))....)))... ( -24.70)
>consensus
CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU___GAUUCGUUUUCGAAAGUAGGCUU___GCUUG____AAAGUGGUUUCAAAA
..(((((((.(((.(((((((......))))))).)))...)))))))........((((....))))..(((((.....)))))................... (-22.88 = -22.60 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:59 2006