| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,539,651 – 12,539,761 |
| Length | 110 |
| Max. P | 0.853293 |
| Location | 12,539,651 – 12,539,761 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 87.71 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -23.26 |
| Energy contribution | -23.07 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12539651 110 + 22407834 CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAACGAUUCUUGGAUUAUUUGGGGCCACGGAAAAAGU--UAUAA-ACUAUACCAAC ..........((((.((((..((((.((...........((((((((((((((...(....)..))))))))))))))..)))))))))).(((--.....-)))...)))). ( -27.82) >DroPse_CAF1 145125 109 + 1 CAUAAUCGAAUUGGAUUUCAGCGUCCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAUCGAUUCUUGGAUUAUUUGGGGCCACGAAAGAA-U--UAUUU-AAUAUACUUAA .....(((....((((......)))).....((((....(((((((((((((((((....))).))))))))))))))))))..))).....-.--.....-........... ( -25.00) >DroEre_CAF1 110225 108 + 1 CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAACGAUUCUUGGAUUAUUUGGGGCCACGGAAAAAGU--UAC---GCUUUACCAGC ..........((((.......((((.((...........((((((((((((((...(....)..))))))))))))))..))))))...((((.--...---.)))).)))). ( -28.52) >DroYak_CAF1 114559 105 + 1 CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUUACGAUUCUUGGAUUAUUUGGGGUCACGAAAAAAGU--UAU---UCUAUACC--- .....(((....((((((..((....)).))))))....(((((((((((((((((....))).))))))))))))))......))).......--...---........--- ( -24.70) >DroAna_CAF1 112739 110 + 1 CAUAAUCGAAUUGGAUUUCAGCGUACGCAAAGUUUUCAGCAAAUAAUCCAGGAUUGCUGACGAUUCUUGGAUUAUUUU-UGCCACGAAAGAAAUAUUAUUAUUAUUAACC--C ..((((..(((...(((((..(((..(((((((.....)).(((((((((((((((....))).))))))))))))))-))).)))...)))))...)))...))))...--. ( -23.60) >DroPer_CAF1 143144 109 + 1 CAUAAUCGAAUUGGAUUUCAGCGUCCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAUCGAUUCUUGGAUUAUUUGGGGCCACGAAAGAA-U--UAUUU-AAUAUACUUAA .....(((....((((......)))).....((((....(((((((((((((((((....))).))))))))))))))))))..))).....-.--.....-........... ( -25.00) >consensus CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAACGAUUCUUGGAUUAUUUGGGGCCACGAAAAAAGU__UAUU__AAUAUACC_AC .....(((....((((((..((....)).))))))....(((((((((((((((((....))).))))))))))))))......))).......................... (-23.26 = -23.07 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:58 2006