Locus 4360

Sequence ID 2L_DroMel_CAF1
Location 12,537,475 – 12,537,595
Length 120
Max. P 0.788241
window6869

overview

Window 9

Location 12,537,475 – 12,537,595
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.19
Mean single sequence MFE -21.68
Consensus MFE -3.96
Energy contribution -3.84
Covariance contribution -0.12
Combinations/Pair 1.32
Mean z-score -1.78
Structure conservation index 0.18
SVM decision value 0.58
SVM RNA-class probability 0.788241
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12537475 120 - 22407834
UAAUUGUUUUCAGUAGCAGUUGUUUACUUAAAUUCAAAUAAAUAUUGAAAUCGUAGAAAUGUUCUGCGAACGAACUCUUUAUUAGUCUUAAGAAACUUGACAACAGACACCGCUAACAAU
..((((((..(.((..(.((((((..(((((.(((((.......))))).(((((((.....)))))))..................)))))......)))))).)..)).)..)))))) ( -20.70)
>DroSec_CAF1 109796 116 - 1
UAAUUGUUGUUAGUAGCAGUUGUUUACUUAAAUUAAAAUAAAUAUUGAAAUCGUAGAAAUGUUCUGCGA----ACUUCUUUUUAAUCUUAAGAAACUUAACAUGGGACACCGCUAACAAU
.....(((((((((....(((((((.((((((((((((........(((.(((((((.....)))))))----..))).))))))).)))))))))..)))..((....))))))))))) ( -25.80)
>DroSim_CAF1 112405 116 - 1
UAAUUGUUGUUAGUAACAGUUGUUUAGUUAAAUUAAAAUAAAUAUGGAAAACAUAGAAAUGUUCCGCGA----ACUCUUUAUUAAUCUUAAGAAACUUAACAUGGGACACCGCUAACAAU
.....(((((((((......((((.((((................(((..((((....)))))))....----..((((..........)))))))).)))).((....))))))))))) ( -19.60)
>DroEre_CAF1 108020 116 - 1
CAAUUGUUAUAAGUGGCAGAUGUUUAUUACAAUUUAAAUAAAUAUUGAGCAAGUAGAAAUGUUAAGGGA----ACCGCUUAUUAAUCUUAAGAAACUUAACAUCAGACGCCACUAACAUA
....((((...((((((.((((((((((........))))))))))......((....((((((((...----....((((.......))))...))))))))...)))))))))))).. ( -26.00)
>DroYak_CAF1 112427 94 - 1
AAAUUGUUAUUAGUGGCAGAUGUUUGUUAAAAUGGAAAUAAAUAUUGAGAAAGUAGAAA--------------------------UCUUAAGAAACUUAACAUUGUACACCGCUAACAUU
.........(((((((..((((((((((........))))))))))......(((..((--------------------------(.(((((...))))).))).))).))))))).... ( -16.30)
>consensus
UAAUUGUUAUUAGUAGCAGUUGUUUACUUAAAUUAAAAUAAAUAUUGAAAACGUAGAAAUGUUCUGCGA____ACUCCUUAUUAAUCUUAAGAAACUUAACAUCGGACACCGCUAACAAU
.............((((.(.(((((.................((((.....))))................................(((((...)))))....)))))).))))..... ( -3.96 =  -3.84 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006