Locus 436

Sequence ID 2L_DroMel_CAF1
Location 1,295,506 – 1,295,597
Length 91
Max. P 0.951018
window710

overview

Window 0

Location 1,295,506 – 1,295,597
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.36
Mean single sequence MFE -18.24
Consensus MFE -14.52
Energy contribution -14.76
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -2.19
Structure conservation index 0.80
SVM decision value 1.41
SVM RNA-class probability 0.951018
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1295506 91 + 22407834
UAAAAAAAAUAAUGCACUCAUGUUUGCAUGGGGAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAACUU
....(((((((((((.((((((....))))))....((((((((((........)).)))))))).......))))..)))))))...... ( -18.20)
>DroSec_CAF1 54886 90 + 1
UAAA-AAAAUAAUGCACUCAUGUUUGCAUGGGAAGAAGUCAAAUGAAAUAAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCCAAUU
...(-((((((((((.((((((....))))))....((((((((((........)).)))))))).......))))..)))))))...... ( -18.00)
>DroSim_CAF1 55736 90 + 1
UAAA-AAAAUAAUGCACUCAUGUUUGCAUGGGAAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAACUU
...(-((((((((((.((((((....))))))....((((((((((........)).)))))))).......))))..)))))))...... ( -18.00)
>DroEre_CAF1 66893 89 + 1
UAAA-AAGAGAAUGCA-UCGUGUUUGCAUGGGAAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUUAAUGAAGCGUAAUGUUUCUCAACUU
....-..(((((.(((-(..(((((.(((......(((((((((((........)).))))))))).))))))))..)))))))))..... ( -21.30)
>DroYak_CAF1 56885 90 + 1
UAAA-AAGAGAAUGCACUCAUGUCUGCAUGGGAAGAAGUCAAACGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAGCUU
.(((-((.(..((((.((((((....))))))....(((((((.((........))..))))))).......))))..).)))))...... ( -15.70)
>consensus
UAAA_AAAAUAAUGCACUCAUGUUUGCAUGGGAAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAACUU
...........((((.((((((....))))))....((((((((((........)).)))))))).......))))............... (-14.52 = -14.76 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:13 2006