| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,513,746 – 12,513,837 |
| Length | 91 |
| Max. P | 0.594854 |
| Location | 12,513,746 – 12,513,837 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 84.57 |
| Mean single sequence MFE | -15.87 |
| Consensus MFE | -9.57 |
| Energy contribution | -9.82 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12513746 91 + 22407834 UC---CACCUCUUCUGGGCCAACAUAC----AUACAUUACUCUUGGCCAUAAAAAAAAGACUCUGUGCCGCUGGCCUACACUUCAUCAGCUCGACUCC ..---(((....(((.((((((.....----...........)))))).........)))....)))..(((((...........)))))........ ( -12.79) >DroSec_CAF1 86601 83 + 1 UC---CACCUCUUCUGGGCCAACAU--------ACAUUACUCUUGGCCAUAA----AAGACUCUCUGCCGCUGGCCUAUACUUCAUCAGCCCGACUCC ..---.........(((((......--------...........(((((...----.((.....)).....)))))............)))))..... ( -13.85) >DroSim_CAF1 89700 83 + 1 UC---CACCUCUUCUGGGCCAACAU--------ACAUUACUCUUGGCCAUAA----AAGACUCUCUGCCGCUGGCCUACACUUCAUCAGCCCGACUCC ..---.........(((((......--------...........(((((...----.((.....)).....)))))............)))))..... ( -13.85) >DroEre_CAF1 84557 90 + 1 UCAGG-CCCUCUUCUGGGCCAACAUAUGCACAUACAUUACUGUUGGCCAUAA----AAGACUC---GCAUCUGGCCUACACUUCAUCACCCCGACUCC ..(((-((........((((((((.(((......)))...))))))))....----.(((...---...))))))))..................... ( -23.00) >consensus UC___CACCUCUUCUGGGCCAACAU________ACAUUACUCUUGGCCAUAA____AAGACUCUCUGCCGCUGGCCUACACUUCAUCAGCCCGACUCC .............(((((((((....................))))))..................((.....))...........)))......... ( -9.57 = -9.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:48 2006