| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,490,475 – 12,490,589 |
| Length | 114 |
| Max. P | 0.971736 |
| Location | 12,490,475 – 12,490,589 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.20 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -13.63 |
| Energy contribution | -15.91 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12490475 114 - 22407834 UAAGUUGUGUUUU-UAU--GUGUGCAAGUAUACAAGUUGGUAAUUA-ACAAAAAUCUAUUAAGAUGAUUAAUAGAUUUGAUGCGAUUCCGCAAUACAUUCAAUAUUUAAGCAUGACGU ...((..(((((.-..(--(((((....)))))).(((((......-....(((((((((((.....)))))))))))..((((....))))......)))))....)))))..)).. ( -27.50) >DroSec_CAF1 63316 114 - 1 UAAGUUGUGUUUA-UAC--AUAUACAAGUACGCAAGUUAGUAAUUA-ACAAAAAUCUAUUAAGAUGAUUAAUUGAUUUGAUGCGAUUCCUCAAUACUUUCAAUAUUUAAGCAUGACGU ...((..((((((-...--((((..(((((((((.(((((...)))-))..(((((.(((((.....))))).)))))..)))).........)))))...)))).))))))..)).. ( -20.60) >DroSim_CAF1 65217 116 - 1 UAAGUUGUGUUUA-UAUAUAUAUACAAGUAUACAAGUUGGUAAUUA-ACAAAAAUCUAUUAAGUUGAUUAAUAGAUUUGAUGCGAUUCCGCAAUACUUUCAAUAUUUAAGCAUGACGU ...((..((((((-.((((......((((((.((((((..((((((-((.............))))))))...)))))).((((....))))))))))...)))).))))))..)).. ( -28.42) >DroEre_CAF1 60400 100 - 1 UAAGUUAGGU-UAGCAU---------UGCACACAUGUUGGUAAUUUAAAUAAAAUCUAUUAAG---AUUAAAGGAUUUGAU-----UUUGCAGUACAACCAAUAGUAAAGCAUGACGU ........((-((((.(---------(((.....(((((((.(((((((..((((((.(((..---..))).))))))...-----)))).)))...))))))))))).)).)))).. ( -16.50) >DroYak_CAF1 63440 101 - 1 AACGUUAGGUUUAUUAU---------UGUAUAUAAGU----GAUGG-AAAAAAAUCUGUCAAG---AUUAAAAGAUUUGAUGCGAAUUCGCAAUACAAUCAAUUUUUAAGCAUGACGU .((((((.(((((..((---------(((((.(((.(----(((((-(......)))))))..---.)))..........((((....))))))))))).......))))).)))))) ( -23.00) >consensus UAAGUUGUGUUUA_UAU___U_U_CAAGUAUACAAGUUGGUAAUUA_ACAAAAAUCUAUUAAG_UGAUUAAUAGAUUUGAUGCGAUUCCGCAAUACAUUCAAUAUUUAAGCAUGACGU ...((((((((((.............(((((....................(((((((((((.....)))))))))))..((((....))))))))).........)))))))))).. (-13.63 = -15.91 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:47 2006