Locus 4355

Sequence ID 2L_DroMel_CAF1
Location 12,482,840 – 12,482,937
Length 97
Max. P 0.739801
window6858

overview

Window 8

Location 12,482,840 – 12,482,937
Length 97
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 85.82
Mean single sequence MFE -23.54
Consensus MFE -16.32
Energy contribution -17.76
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -2.04
Structure conservation index 0.69
SVM decision value 0.45
SVM RNA-class probability 0.739801
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12482840 97 - 22407834
-----------ACUAAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCGC-AAACAAAUUUGUCAAA
-----------...........((((.(((...(((((.((((((((...(((............)))...)))))))).)))))....)))-.))))........... ( -22.60)
>DroSec_CAF1 55514 97 - 1
-----------ACUGAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCCC-AAACAAAUUUGUCAAA
-----------..(((......((((.......(((((.((((((((...(((............)))...)))))))).))))).......-.))))......))).. ( -20.86)
>DroSim_CAF1 57380 97 - 1
-----------ACUGAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCCC-AAACAAAUUUGUCAAA
-----------..(((......((((.......(((((.((((((((...(((............)))...)))))))).))))).......-.))))......))).. ( -20.86)
>DroEre_CAF1 52593 102 - 1
CAUGCACAUGCACUGAAACCAGUGUUUUGGCUCUCCCAACUGUGUGUGUGUAUAUC-------UAAUAAGAAAAAGCAGCUGGGACCUCCCCGAAACAAAUUUGUCAAA
..(((....))).(((......((((((((...(((((.((((.......(((...-------..))).......)))).))))).....))))))))......))).. ( -25.04)
>DroYak_CAF1 55365 101 - 1
CAUGCACAUGCACUGAAACCAGUGUUUGGGCUCUCCCAACUGUGUGUGUGUAUAUC-------UAAUAAGAAAAAGCAGCUGGGACCUCCCC-AAACAAAUUUGUCAAA
..(((....))).(((......((((((((...(((((.((((.......(((...-------..))).......)))).)))))....)))-)))))......))).. ( -28.34)
>consensus
___________ACUGAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCCC_AAACAAAUUUGUCAAA
.............(((......(((..(((...(((((.((((((((...(((............)))...)))))))).)))))....)))...)))......))).. (-16.32 = -17.76 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:46 2006