Locus 4354

Sequence ID 2L_DroMel_CAF1
Location 12,482,332 – 12,482,431
Length 99
Max. P 0.500000
window6857

overview

Window 7

Location 12,482,332 – 12,482,431
Length 99
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 83.65
Mean single sequence MFE -17.98
Consensus MFE -13.38
Energy contribution -13.54
Covariance contribution 0.16
Combinations/Pair 1.07
Mean z-score -1.51
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12482332 99 + 22407834
UUUUUUCUCUCGGAAUGACCUCUUGGCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU-----UAUCUAACCAAUGCUUGUUUUCCCACACGCUAUUUUUAC
...........((((.(((..((((((((((((....)))))))(((.........))).-----.......)))).)...)))))))................ ( -13.90)
>DroSec_CAF1 55005 98 + 1
-UUUUUCUCUCGGAAUGACCUCUUGCCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU-----UAUCUAACCAAUGCUUGUUUUCCCACAGGCUAUUUUUAC
-..........(((..(((...(((((((((((....)))))))).))).......))).-----..))).......((((((......))))))......... ( -19.20)
>DroSim_CAF1 56882 98 + 1
-UUUUUCUCUCGGAAUGACCUCUUGCCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU-----UAUCUAACCAAUGCUUGUUUUCCCACAGGCUAUUUUUAA
-..........(((..(((...(((((((((((....)))))))).))).......))).-----..))).......((((((......))))))......... ( -19.20)
>DroEre_CAF1 52092 104 + 1
UUUUUUUUCUCGGGUUGACCUCUGCCCAGGUUGUUAUCAGCUUGGACAAUAACCCCCUUUCUAUCUAUAUAACCAAUGUUUGCUUUCCCACAGGCUAUUUUUAA
...........((((((.....((.((((((((....)))))))).)).))))))......................(((((........)))))......... ( -19.70)
>DroYak_CAF1 54891 83 + 1
UUUUCUU--UCGGGAUGACCUUU-UCCAGGUUGUUAUCAGCUUGGACAAUAACCC------------------CAAUGUUUGCUUUCCCACAGGCUAUUUUUAC
.......--..(((.........-(((((((((....))))))))).......))------------------)...(((((........)))))......... ( -17.89)
>consensus
UUUUUUCUCUCGGAAUGACCUCUUGCCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU_____UAUCUAACCAAUGCUUGUUUUCCCACAGGCUAUUUUUAC
...........((.....)).....((((((((....))))))))................................(((((........)))))......... (-13.38 = -13.54 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:45 2006