Locus 4353

Sequence ID 2L_DroMel_CAF1
Location 12,481,364 – 12,481,457
Length 93
Max. P 0.983971
window6856

overview

Window 6

Location 12,481,364 – 12,481,457
Length 93
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 72.14
Mean single sequence MFE -21.98
Consensus MFE -12.55
Energy contribution -12.18
Covariance contribution -0.38
Combinations/Pair 1.40
Mean z-score -2.18
Structure conservation index 0.57
SVM decision value 1.96
SVM RNA-class probability 0.983971
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12481364 93 - 22407834
GAGAUUACA----------AUUGUUUGCAUAAGCAGGGUACUAGGUGACAAGUAUGGCAGAGGAAAAUUUAAUCCAAGUAAAUUAAUUUCAACGGAUUUUCAU
(((((((..----------...((((((....((...(((((.(....).))))).))...(((........)))..)))))))))))))............. ( -19.30)
>DroSec_CAF1 54067 90 - 1
---AUUACA----------AUUGUUUGACUAAGCAGGGUACUGGGUGACCAGUGUUGCAAAGGAAAACUAAAUCCCAGAAAAUUAAUUUCAACGGAUUUUUAU
---......----------...((((..((..((((..((((((....))))))))))..))..)))).((((((..((((.....))))...)))))).... ( -24.00)
>DroSim_CAF1 55943 90 - 1
---AUUACA----------AUUGUUUGACUAAGCAGGGUACUGGGUGACCAGUGUUGCAAAGGAAAACUAAAUCCCAGAAAAUUAAUUUCAACGGAUUUUUAU
---......----------...((((..((..((((..((((((....))))))))))..))..)))).((((((..((((.....))))...)))))).... ( -24.00)
>DroEre_CAF1 51083 90 - 1
GAGAAUAUAUAUGUGCAUAAAUGGUUGAUCUCGCCGGGUAUUGGGUGACCAGUAUGGUAG-------------CCGUGCAAAUGAAUUUAAACGGAUUUUUAU
((((.....(((........))).....))))(((..(((((((....))))))))))..-------------((((..(((....)))..))))........ ( -20.60)
>consensus
___AUUACA__________AUUGUUUGACUAAGCAGGGUACUGGGUGACCAGUAUGGCAAAGGAAAACUAAAUCCCAGAAAAUUAAUUUCAACGGAUUUUUAU
................................((((..((((((....))))))))))............................................. (-12.55 = -12.18 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:44 2006