Locus 4352

Sequence ID 2L_DroMel_CAF1
Location 12,473,140 – 12,473,231
Length 91
Max. P 0.995990
window6855

overview

Window 5

Location 12,473,140 – 12,473,231
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 93.83
Mean single sequence MFE -28.40
Consensus MFE -26.40
Energy contribution -26.00
Covariance contribution -0.40
Combinations/Pair 1.14
Mean z-score -1.82
Structure conservation index 0.93
SVM decision value 2.64
SVM RNA-class probability 0.995990
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12473140 91 - 22407834
GCCGUUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCGCACAGUUCUAGCGAUGGACUCGUGACUUCAA
.((((((((((.((((.(((.(((((.(((((((......))))))).)...))))..))).)))).)))))))))).............. ( -31.30)
>DroSec_CAF1 45823 91 - 1
GCCUUUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCUCACAGUUCUAGCGAUGGACUCGUGACUUCAA
(((......)))(..(((.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).)))..)..... ( -28.90)
>DroSim_CAF1 47705 91 - 1
GCCUUUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCUCACAGUUCUAGCGAUGGACUCGUGACUUCAA
(((......)))(..(((.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).)))..)..... ( -28.90)
>DroEre_CAF1 42805 88 - 1
GCC---GUUGGUGCUCCGUGUCUAUCAGUAGAUCUAGUCUGGUCUGUAGUUUAUGGCCCUCACAGCUCUAGCGAUGGACUCGUGACUUCAA
...---.((((.(.((((.(((((((..((((.((.((..((.(((((...))))).))..)))).))))..))))))).)).))).)))) ( -22.90)
>DroYak_CAF1 45782 88 - 1
GCC---GUUGGCGCGGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUGGCUCUCACAGCUCUAGCGAUGGACUCGUGACUUCAA
(((---((....)))))(.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).).......... ( -30.00)
>consensus
GCC_UUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCUCACAGUUCUAGCGAUGGACUCGUGACUUCAA
(((......)))(..(((.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).)))..)..... (-26.40 = -26.00 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:43 2006