Locus 4349

Sequence ID 2L_DroMel_CAF1
Location 12,462,061 – 12,462,162
Length 101
Max. P 0.930964
window6851

overview

Window 1

Location 12,462,061 – 12,462,162
Length 101
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 78.02
Mean single sequence MFE -17.98
Consensus MFE -11.34
Energy contribution -14.10
Covariance contribution 2.76
Combinations/Pair 1.12
Mean z-score -2.07
Structure conservation index 0.63
SVM decision value 1.21
SVM RNA-class probability 0.930964
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12462061 101 - 22407834
GUUCCAAUUUUGUCAUUGUCAUUGAUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUACAUAUUUUACUGUUACCC-------AUAU
.........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))....................-------.... ( -21.30)
>DroSec_CAF1 35060 101 - 1
GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUACUCAUUUUACUUUUACCC-------AUAU
.........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))....................-------.... ( -20.80)
>DroSim_CAF1 36189 101 - 1
GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUACUCAUUUUACUUUUACCC-------AUAU
.........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))....................-------.... ( -20.80)
>DroEre_CAF1 32173 100 - 1
GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAU-AAGCAACGAUAAAAAUCCCGUGUAUUAUAUUUUAUUCAAUGAC-------AUAUUACUUUAGCCCACAUACCCUAC
................(((((((((((.(((-((...(((..........)))...)))))...)).))))))))-------)......................... ( -13.90)
>DroYak_CAF1 34791 90 - 1
GUUCCAAUUUUCUCAUUGUCAUUGGUACUGA-AUGCUACGAUAAAAGUCCCGAGU---AUAUUUUAUUCAAUGA--------------CUUUAACCCACAUACCAUAU
.................((((((((....((-(((((..(((....)))...)))---)).))....)))))))--------------)................... ( -13.10)
>consensus
GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUAC__AUUUUACUUUUACCC_______AUAU
.........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))............................... (-11.34 = -14.10 +   2.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:39 2006