Locus 4346

Sequence ID 2L_DroMel_CAF1
Location 12,457,003 – 12,457,098
Length 95
Max. P 0.543597
window6846

overview

Window 6

Location 12,457,003 – 12,457,098
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 74.32
Mean single sequence MFE -15.45
Consensus MFE -6.90
Energy contribution -7.90
Covariance contribution 1.00
Combinations/Pair 1.20
Mean z-score -1.82
Structure conservation index 0.45
SVM decision value 0.02
SVM RNA-class probability 0.543597
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12457003 95 - 22407834
CCAAAAGCUGGCUGCAAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACGGGGAAAAAGAGCAGCAGAAAAUGCAAAAAUACAAAUCGAUAA
......((..(((((.......(((((.....)))))...(((((..((.....))..)))))))))).......)).................. ( -17.10)
>DroSec_CAF1 29843 93 - 1
UCAA-GCUUGGCUGCUAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACAGAGAAAAACAGCAG-AGGAAAUACAAAAAUACAAAUCGAUAA
....-.(((.((((........(((((.....)))))...((((((.....))))))....)))).)-))......................... ( -13.90)
>DroSim_CAF1 29165 93 - 1
UCAA-GCUUGGCUGCUAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACAGAGAAAAACAGCAG-AGGAAAUACAAAAAUACAAAUCGAUAA
....-.(((.((((........(((((.....)))))...((((((.....))))))....)))).)-))......................... ( -13.90)
>DroEre_CAF1 26958 90 - 1
CCAA-GC-UGGCUGCAAAAUAAUACUUGAUGAAAGUAAAAUUUUUGGCCAACGGAGAAAAACAGCAG-CAGAAAUUCA--AAUACAAAUCGAUAA
....-..-..(((((.......(((((.....)))))...((((((.....))))))......))))-).........--............... ( -15.40)
>DroYak_CAF1 29492 90 - 1
GUAA-GC-UGGCUGCAAAAUAAUACUUGAUGAAAGUAGAAUUUUUGGCCAACGGAGAAAAACAGCAG-CAGAAAUACA--AAUGCAAAUCGAUAA
(((.-.(-((.((((.......(((((.....)))))...((((((.....))))))......))))-)))...))).--............... ( -17.40)
>DroMoj_CAF1 31079 73 - 1
UUU-GAAUUGGCUUCAAAGAAAUACUUAAAUAUUGUAAAA-----------AGUAGAAUUUGAGCCG-CGC---------AAUGUGCAUGGGUAG
...-.....((((.((((....(((((............)-----------))))...))))))))(-(((---------...))))........ ( -15.00)
>consensus
UCAA_GCUUGGCUGCAAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACGGAGAAAAACAGCAG_AGGAAAUACA__AAUACAAAUCGAUAA
..........((((........(((((.....)))))...((((((.....))))))....)))).............................. ( -6.90 =  -7.90 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:34 2006