Locus 4345

Sequence ID 2L_DroMel_CAF1
Location 12,456,859 – 12,456,959
Length 100
Max. P 0.911806
window6845

overview

Window 5

Location 12,456,859 – 12,456,959
Length 100
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.15
Mean single sequence MFE -13.13
Consensus MFE -9.70
Energy contribution -10.20
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.40
Structure conservation index 0.74
SVM decision value 1.08
SVM RNA-class probability 0.911806
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12456859 100 - 22407834
-ACAGAAGGGAAAAUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAAAAAAAAAACAAAAGCAAACCCGA
-......(((...(((.((......)).))).((((((((((((.....(((...)))....))))))))))))......................))).. ( -15.00)
>DroPse_CAF1 34617 92 - 1
UAAAGAAAGGAAAUGUAAAGAAA-AAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA-----AAGCAAA---UAACAAGA
.......................-....(((.((((((((((((.....(((...)))....))))))))))))....-----..)))..---........ ( -11.90)
>DroSim_CAF1 29026 95 - 1
-ACAGAUGGGAAAAUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA-----AAACAAAAGCAAACCCGA
-.....((((...(((.((......)).))).((((((((((((.....(((...)))....))))))))))))....-----.............)))). ( -15.10)
>DroEre_CAF1 26817 98 - 1
-ACAGAAGGGAAAUUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAAA--AAAAACAAAAGCAAACCCGA
-......(((..((((.......)))).....((((((((((((.....(((...)))....)))))))))))).....--...............))).. ( -14.90)
>DroWil_CAF1 33674 81 - 1
-GUA---G-GAA--------AGAGAAUAUGUGAUAAUUUGCAUUGUGCA------GACAUAAGAUGUAAAUUGUAAAAAA-GAAAACAACAACAAGCAAGA
-...---.-...--------............(((((((((((((((..------..)))..))))))))))))......-.................... ( -10.00)
>DroPer_CAF1 33835 92 - 1
UAAAGAAAGGAAAUGUAAAGAAA-AAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA-----AAGCAAA---UAACAAGA
.......................-....(((.((((((((((((.....(((...)))....))))))))))))....-----..)))..---........ ( -11.90)
>consensus
_ACAGAAGGGAAAUUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA_____AAACAAAAGCAAACAAGA
................................((((((((((((.....(((...)))....))))))))))))........................... ( -9.70 = -10.20 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:33 2006