| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,454,637 – 12,454,757 |
| Length | 120 |
| Max. P | 0.667558 |
| Location | 12,454,637 – 12,454,757 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.78 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -21.41 |
| Energy contribution | -21.30 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12454637 120 - 22407834 ACAUGGUGUCGGAUUGAAUGGGCGUACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCACGUUGGCCAAACUAUUUAAUCGCUCGUCGACGGUCACGAAUACCAGAUUAUUAAUCA ...(((((((((((((.(((((((..........((((((....))))))((((((((.......))))))))..........)))))))...))))).)).))))))(((.....))). ( -39.70) >DroSec_CAF1 27494 120 - 1 ACAUGGUGUCGGACCUAAGGGGCGUACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCAAGUUGGCCACACUAUUUAAUCGCUCGUCGACGGUCACGAAUACCAGAUUAUCAAUCA ...((((((((((((..(.(((((..........((((((....)))))).(((((((.......)))))))...........))))).)....)))).)).))))))(((.....))). ( -38.60) >DroSim_CAF1 26834 99 - 1 GCG---------------------UACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCACGUUGGCCGAACUAUUUAAUCGGUCGUCGACGGUCACGAAUACCAAAUUAUCAAUCA .((---------------------(((..(((((.(((((..((.((((.((((((((.......)))))))))))).))..))))).)))))..)).)))................... ( -27.60) >consensus ACAUGGUGUCGGA___AA_GGGCGUACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCACGUUGGCCAAACUAUUUAAUCGCUCGUCGACGGUCACGAAUACCAGAUUAUCAAUCA ............................((((((((((((....))))))((((((((.......)))))))).........(((.(((....)))...)))..........)))))).. (-21.41 = -21.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:31 2006