| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,449,584 – 12,449,699 |
| Length | 115 |
| Max. P | 0.843665 |
| Location | 12,449,584 – 12,449,699 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -41.48 |
| Consensus MFE | -25.52 |
| Energy contribution | -24.50 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12449584 115 + 22407834 UUAA-----ACAUACAGAUUGGCUGCUGGUGGCCAGUGGAUUAUUCCAGGCGGUCUUUGCGUUGGCUUUCGCCUACUGGGCGGACGUCUAUCAUCCCAUCAAAUGGCUGGUGGGAACUCU ...(-----((.((.((((((.(((((((...)))))(((....))))).)))))).)).)))(((.((((((.....)))))).))).....((((((((......))))))))..... ( -41.30) >DroVir_CAF1 24576 120 + 1 UUAUUUUGUGCACACAGAUUGGCUUUUGGUCAGCAGUGGAUUAUUCCAGGCGGUGUUCGCCUUGGCCUUCGCCUACUGGGCGGACGUCUAUCAUCCGAUCAAGUGGCUGGUCGGAACCCU ......(((....)))(((..((((((((((.((..((((....)))).))(..((((((((.(((....)))....))))))))..)........))))))).)))..)))........ ( -44.60) >DroPse_CAF1 29534 113 + 1 UUAC-----CC--AUAGAUUGGCUACUGGUGACUAGCGGCCUGUGCCAGGCUGUGUUUGCCUUGGUGUUCGCCUUCUGGGCGGAUGUCUUCCAUCCGAUCAAGUGGCUGGUGGGCACGUU ...(-----((--((.....(((((((((..(...((((((((...))))))))..)..))..((..((((((.....))))))..)).............))))))).)))))...... ( -45.40) >DroWil_CAF1 28417 110 + 1 U----------UUUCAGAUUGGCUAUUGGUUAGCAGUGGGAUAUUUCAGGCUGUCUUUGCCUUGGUCUUUGCCUUUUGGGCCGAAGUCUUUCAUCCCAUUAAGUGGUUGGUGGGAACAUU .----------.....((..((((...(((.((((((..((....))..)))).))..)))(((((((.........)))))))))))..)).(((((((((....)))))))))..... ( -33.40) >DroMoj_CAF1 26326 108 + 1 U------------GCAGAUUGGCUUCUGGUCAGCAGUGGCCUAUUCCAGGCGGUGUUUGCCUUGGCCUUUGCCUACUGGGCGGACGUCUACCAUCCGAUCAAGUGGCUGGUGGGUACGCU .------------...((..((((.(((.....))).))))...))..((((..((((((((.(((....)))....)))))))).(((((((.(((......))).)))))))..)))) ( -40.60) >DroAna_CAF1 25783 116 + 1 GUAA---C-UCACCUAGAUUGGCUUCUGGUUACCAGUGGCCUGUGCCAGGCAGUUUUCGCACUGGCCUUCGCCUACUGGGCGGAUGUCUACCAUCCCAUUAAGUGGCUGGUGGGGACUCU ....---(-(((((..((..((((.((((...)))).))))...(((((((.......)).)))))..))(((.(((..(.(((((.....))))))....)))))).))))))...... ( -43.60) >consensus UUA_______CA_ACAGAUUGGCUUCUGGUCACCAGUGGCCUAUUCCAGGCGGUGUUUGCCUUGGCCUUCGCCUACUGGGCGGACGUCUACCAUCCCAUCAAGUGGCUGGUGGGAACGCU ...................(((...(((.....))).(((....)))(((((...(((((((.(((....)))....)))))))))))).)))((((((((......))))))))..... (-25.52 = -24.50 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:28 2006