Locus 4340

Sequence ID 2L_DroMel_CAF1
Location 12,443,902 – 12,444,022
Length 120
Max. P 0.500000
window6838

overview

Window 8

Location 12,443,902 – 12,444,022
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -35.15
Consensus MFE -20.09
Energy contribution -20.35
Covariance contribution 0.26
Combinations/Pair 1.39
Mean z-score -1.67
Structure conservation index 0.57
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12443902 120 - 22407834
UCAUGCUCUCGCUUAUCCUCUCCUACAUCGGUGGUCAGCGGAAUCGUCCCCGUUGGAUUGCCUGGGGCAUUGUCUUCUGCGGCCUGUCCUGCUACAUACUCGUCCUGCCUCAUUUCAUCU
....((....)).................((..((((((((........))))).)))..))(((((((.((......((((......))))........))...)))))))........ ( -28.34)
>DroVir_CAF1 15264 120 - 1
UAAUGCUGUCGCUGAUAUUAUCCUAUAUCGGUGGGCAGCGCAAUCGGCCGAUGUGGAUAGCCUGGGGCAUUAUGCUCUGCGGCGUAUCCUGUUUUAUUCUGGUGCUGCCCCAUUUCAUCU
..........((((((((......))))))))(((((((((.(((....)))..((((((((((((((.....)))))).))).)))))............))))))))).......... ( -45.20)
>DroGri_CAF1 19558 120 - 1
UAAUGCUAUCGCUGAUCUUAUCCUAUAUCGGUGGACAGCGCAAUCGUCCGCGCUGGAUCGCCUGGGGUAUUGUGCUCUGCGGCAUAUCCUGCUAUAUACUCGUCCUGCCCCAUUUCAUCU
....((..((((((((.(......).)))))))).((((((........))))))....)).(((((((..(((....((((......))))....)))......)))))))........ ( -33.40)
>DroWil_CAF1 17340 120 - 1
UAAUGUUAUCUCUGAUAUUAUCGUAUAUUGGAGGACAACGUAAUCGUCCACGUUGGAUAGCCUGGGGCAUUGUAUUUUGUGGUCUAUCCUGCUAUAUUUUGGUUCUUCCUCACUUUAUCU
........((((..((((......))))..)))).((((((........))))))(((((..(((((((..((((...(..(......)..).))))..))......)))))..))))). ( -27.40)
>DroMoj_CAF1 17933 120 - 1
UAUUGCUGUCACUGAUCCUAUCCUAUAUCGGUGGCCAGCGCAAUCGUCCACGCUGGAUCGCCUGGGGCAUUGUGCUCUGCGGCAUAUCCUGUUUCAUAUUGGUUCUGCCGCACUUUAUCU
.......(((((((((..........))))))))).((((((((.((((..((......))...)))))))))))).(((((((...((.((.....)).))...)))))))........ ( -40.40)
>DroAna_CAF1 19663 120 - 1
UCAUGCUCUCCCUCAUCCUAUCCUAUAUUGGCGGUCAACGGAAUCGCCCGCGUUGGAUAGCCUGGGGCAUAGUGUUCUGCGGGCUAUCCUGCUACAUCCUCUGCCUGCCACACUUCAUCU
..........(((((..((((((......(((((((....).))))))......))))))..)))))...(((((...((((((..................)))))).)))))...... ( -36.17)
>consensus
UAAUGCUAUCGCUGAUCCUAUCCUAUAUCGGUGGACAGCGCAAUCGUCCGCGUUGGAUAGCCUGGGGCAUUGUGCUCUGCGGCCUAUCCUGCUACAUACUCGUCCUGCCCCACUUCAUCU
........((((((((..........)))))))).((((((........))))))(((....(((((((.........((((......)))).............)))))))....))). (-20.09 = -20.35 +   0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:27 2006