| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,441,731 – 12,441,831 |
| Length | 100 |
| Max. P | 0.876774 |
| Location | 12,441,731 – 12,441,831 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 81.28 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -15.60 |
| Energy contribution | -16.33 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.876774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12441731 100 - 22407834 GCCCAUUACUCCGCUCCUGGCCAAGAAAUCCGAACAGGAGUAAAAUCAACAAAAAAAAGAAAGUGCAACCCAUCCGUGAUACUCAAUUAUAAGGAGUAGA .....((((((((((((((..(.........)..)))))))....................((((..((......))..)))).........))))))). ( -22.10) >DroSec_CAF1 14078 95 - 1 GCCCAUUACUCCGCUCCUGGCCAAGAAAUCCGAACAGGAGUAAUACCAAAAAAAAAAA-----GGCAACCCAUCCGUGAUACUCAAUUAUAAGGAGUAGA .....((((((((((((((..(.........)..))))))).................-----(....).......................))))))). ( -21.00) >DroSim_CAF1 13499 99 - 1 GCCCAUUACUCCGCUCCUGGCCAAGAAAUCCGAACAGGAGUAAUACCAAAAAAAAAAA-AAAUGGCAACCCAUCCGUGAUACUCAAUUAUAAGGAGUAGA .....((((((((((((((..(.........)..))))))).................-..((((....))))...................))))))). ( -22.20) >DroEre_CAF1 14742 89 - 1 GCCCAUUACUCCGCUCCUGGCCAAGAAGUCCGAACAGGAAUAAUACGAAAA------A-----GGCAACCCAUCCGUGAUACUCAAUUAUAAGGAGUAGA .....(((((((..(((((..(.........)..)))))....((((....------.-----(....).....))))..............))))))). ( -19.00) >DroYak_CAF1 13851 89 - 1 GCCCAUUACUCCGCUCCUGGCCACGAAAGCCGAAGAGGAAUAAAACUAAGA------A-----GGAAACCCAUCCGUGAUACUGAAUCAUAUGGAGUAGA .....(((((((((((.((((.......))))..)))..............------.-----(((......)))(((((.....))))).)))))))). ( -20.20) >DroAna_CAF1 17510 89 - 1 ACCCAUUACUCCGCUGUUGGCCAAAAAGAAUCAACAGGAGGAAUACUAGUG------G-----GUAGUCCCACCCGUGAUACUCAAUUCUAAGGAGUAGA .....(((((((.(((((((..........)))))))(((...(((..(((------(-----(....)))))..)))...)))........))))))). ( -29.20) >consensus GCCCAUUACUCCGCUCCUGGCCAAGAAAUCCGAACAGGAGUAAUACCAAAA______A_____GGCAACCCAUCCGUGAUACUCAAUUAUAAGGAGUAGA .....((((((((((((((...............)))))))..................................(((((.....)))))..))))))). (-15.60 = -16.33 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:25 2006