| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,424,731 – 12,424,841 |
| Length | 110 |
| Max. P | 0.993090 |
| Location | 12,424,731 – 12,424,841 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.40 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -19.46 |
| Energy contribution | -19.34 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.993090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12424731 110 - 22407834 AAAUUCAUCUGGCAACUCUCGUUCGAACAGCCAGCAUAUUUCCAGCUCUGUAAAAUUAACAGAAAUGUUAAGAAC----CUACUGCUGCCAGGUGGCGCUAGUAUCAGCGUCUU .....(((((((((.(....((((..((((..(((.........)))))))....((((((....))))))))))----.....).)))))))))(((((......)))))... ( -33.90) >DroSec_CAF1 248229 110 - 1 AAAUUCAUCUGGCAACUCUCGUUCAAACAGCCAGCCUAUUUCCAGCUCUGUAAAAUUAACAGAAAUGUUAAUAAU----GUAUUGCCGCUAGAUGGCGCUAGUAUCAGCUUCUU ....(((((((((.............((((..(((.........)))))))...(((((((....)))))))...----........))))))))).(((......)))..... ( -25.40) >DroSim_CAF1 256098 110 - 1 AAAUUCAUCUGGCAACUCUCGUUCAAACAGGCAGCAUAUUUCCAGAUCUGUAAAACUAACAGAAAUGUUAAUAAC----GUACUGCUGCUAGAUGGCGCUAGUAUCAGCUUCUU ....(((((((((.......((....)).(((((..((((..((..(((((.......)))))..))..))))..----...)))))))))))))).(((......)))..... ( -26.90) >DroEre_CAF1 247014 99 - 1 AAAUCCAUCUGGCAACUUUGAAUCACAAUG--------------GCUCUGUACAACUUACAGAAAUGUUAGGAACAGCAGCAGUGC-GCUAGGUGGCGCUAGUGUCAGCUCCUU ....(((((((((.((((((.....)))..--------------(((((((....((.(((....))).))..)))).))))))..-))))))))).(((......)))..... ( -28.00) >DroYak_CAF1 257648 96 - 1 AAAUCCAUCUGGCAACCUUGGUUCGCAAAG--------------GCUCUGUAAAACUUACAGAAAUGUUGGGAAC----GCAUUGCUGCUAGGUGGCGCUAGUGACAGCUUCUU ....((((((((((.(..((((((.(((..--------------..((((((.....))))))....))).))))----.))..).)))))))))).(((......)))..... ( -33.30) >consensus AAAUUCAUCUGGCAACUCUCGUUCAAACAG_CAGC_UAUUUCCAGCUCUGUAAAACUAACAGAAAUGUUAAGAAC____GUACUGCUGCUAGGUGGCGCUAGUAUCAGCUUCUU ....((((((((((((....)))................................((((((....))))))................))))))))).(((......)))..... (-19.46 = -19.34 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:24 2006