Locus 433

Sequence ID 2L_DroMel_CAF1
Location 1,279,512 – 1,279,604
Length 92
Max. P 0.619508
window707

overview

Window 7

Location 1,279,512 – 1,279,604
Length 92
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.96
Mean single sequence MFE -28.96
Consensus MFE -21.85
Energy contribution -21.19
Covariance contribution -0.66
Combinations/Pair 1.52
Mean z-score -0.83
Structure conservation index 0.75
SVM decision value 0.18
SVM RNA-class probability 0.619508
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1279512 92 - 22407834
GUCAGCGAGUC-----------CUUGCUCCU-----UAGUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGUGCUUUAUAAAACAAAUAAGUUGGAGCGCCUCGGGCUCC
......(((((-----------(..((..((-----(((..((........))..)))))..))(((.((((((((..............))))))))))))))))). ( -29.94)
>DroVir_CAF1 61713 79 - 1
GUGUCAAUGUG-----------GGUGUG---GAGUGUAC--G-------------UUGUGCCGCGGGUGUGCUUUAUAAAACAAAUAAGCGAAUGCGCUUCAGGCGUC
..(((..(((.-----------..((((---(((..(((--.-------------(((.....))))))..)))))))..)))...(((((....)))))..)))... ( -21.50)
>DroSec_CAF1 38977 92 - 1
GUCAGCGAGUC-----------CUUGCUCCU-----UAGUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUGAAGCGCCUCGGGCUCC
......(((((-----------(..((..((-----(((..((........))..)))))..))(((.((((((((..............))))))))))))))))). ( -32.24)
>DroSim_CAF1 40191 91 - 1
GUCAGCGAGUC-----------CUUGGUCCU-----UAGUCCUGAAUCCCGAGUCCUGAGCCGUGGGUGCGCUUUAUAAAACA-AUAAGUUGGAGCGCCUCGGGCUCC
.......((..-----------(((((...(-----((....)))...)))))..))(((((.((((.((((((((.......-......))))))))))))))))). ( -30.22)
>DroEre_CAF1 51390 92 - 1
GUCGGCGAGUC-----------CUUGCUCCU-----UAGUCCUGAAUCCCGUGUCCCGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUCGAGCGCCUCGGGCUCC
..(((.((.((-----------...(((...-----.)))...)).)))))......(((((.((((.((((((.....(((......))).))))))))))))))). ( -29.00)
>DroYak_CAF1 40697 103 - 1
GUCAGUGAGUCCUGGCUCUCUCCUUGCUCCU-----UCAUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUGAAGCGCCUCGAGCUCC
......((((...(((((....((((....(-----((.....)))...))))....))))).((((.((((((((..............)))))))))))).)))). ( -30.84)
>consensus
GUCAGCGAGUC___________CUUGCUCCU_____UAGUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUGAAGCGCCUCGGGCUCC
...((((((.............)))))).............................(((((.((((.((((((((..............))))))))))))))))). (-21.85 = -21.19 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:10 2006