| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,388,506 – 12,388,607 |
| Length | 101 |
| Max. P | 0.686316 |
| Location | 12,388,506 – 12,388,607 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 90.77 |
| Mean single sequence MFE | -34.62 |
| Consensus MFE | -28.28 |
| Energy contribution | -28.35 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12388506 101 - 22407834 GAGCAGCAGUGUCGCGAUGGCU---------GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((((....(..(......)..)....)))))))))......))))).))..)).))...(((((((.....))))))). ( -33.10) >DroSec_CAF1 212453 101 - 1 GAGCAGCAGUGUCGCGAUGGCU---------GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((((....(..(......)..)....)))))))))......))))).))..)).))...(((((((.....))))))). ( -33.10) >DroSim_CAF1 220040 101 - 1 GAGCAGCAGUGUCGCGAUGGCU---------GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((((....(..(......)..)....)))))))))......))))).))..)).))...(((((((.....))))))). ( -33.10) >DroEre_CAF1 211153 110 - 1 GAGCAGCAGUGUCGCGAUGCCUGGAUGGGGUGGAGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((.....))))........((.(((.(((......))).))).))......)))))).))..)).))...(((((((.....))))))). ( -35.10) >DroYak_CAF1 220920 101 - 1 GAGCAGCAGUGUCGCGAUGGCU---------GGAGAGCGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((...(((..((........))..))).)))))))......))))).))..)).))...(((((((.....))))))). ( -34.70) >DroAna_CAF1 199744 88 - 1 GAGCGGCAGCGUCGCGAUG---------------------GGCGGGGCAAAACAAUGC-CCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGUCAAUGUAAUUA ..(((((...(.((((((.---------------------(((.(((((......)))-)).)))......)))))).)...)))))...(((((((.....))))))). ( -38.60) >consensus GAGCAGCAGUGUCGCGAUGGCU_________GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((..............(....)..(((.(((((......))).)).)))......)))))).))..)).))...(((((((.....))))))). (-28.28 = -28.35 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:09 2006