| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,381,537 – 12,381,631 |
| Length | 94 |
| Max. P | 0.973878 |
| Location | 12,381,537 – 12,381,631 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -25.86 |
| Consensus MFE | -15.15 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.973878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12381537 94 - 22407834 GCAACAUUAUUCAGAACAUUUUGGCCAGGGGCU-------CAG-GA-----CGAGCUGCAAAGU--AAUACAUAUGUAAAAACAGAUGUGAACAAGU--U--GGCUAAUGGCU ....................((((((((.((((-------(..-..-----.))))).).....--..(((((.(((....))).))))).......--)--))))))..... ( -22.30) >DroVir_CAF1 261509 92 - 1 GCAA---UAUUCAAAGCAU---AGCCGCAGGCGUUA----CGG-CA-----GAAGCUGUAAAGC--AAUACAUGUGUAAAAACAGAUGUGAACAAGC--UU-GGCUAAUGGCU ....---.......(((.(---(((((.((((.(((----(((-(.-----...))))))).))--..(((((.(((....))).)))))......)--))-)))))...))) ( -28.80) >DroPse_CAF1 287133 103 - 1 AGAACAUUAUUCAAAGCAU---UGCCUGGGGCGCUUUUCCCAG-CAAGAGUGAAGCUGUAAAGC--AAUACAUAUGUAAAAACAGAUGUGAACAAGU--U--AGCUAAUGGCU ....(((((((((...(.(---(((.(((((......))))))-))))..))))((((......--..(((((.(((....))).))))).......--)--))))))))... ( -23.66) >DroWil_CAF1 265535 101 - 1 GCAACAUUAUUCAAAGCAU---AGCCUAGGGCGCUU--CCGAGGCA-----AAGGCUGUAAAGCAGAAUACAUAUGUAAAAACAGAUGUGAACAAGUUUU--GGCUAAUGGCU ....(((((..((((((((---(((((...((.((.--...)))).-----.))))))).........(((((.(((....))).))))).....)))))--)..)))))... ( -27.70) >DroMoj_CAF1 263177 96 - 1 GCAACAUUAUUCAAAGCAU---AGCCGCAGGCGUUA----CGG-CA-----AAAGCUGUAAAGC--AAUACAUGUGUAAAAACAGAUGUGAACAAGC--UGAGGCUAAUAGCU ..............(((.(---((((.(((((.(((----(((-(.-----...))))))).))--..(((((.(((....))).)))))......)--)).)))))...))) ( -31.00) >DroAna_CAF1 192679 90 - 1 CGAACAUUAUUCAAAGCA---UGGCCAGGGGCU-------AA--GA-----GAAGCUGUAAAGU--AAUACAUAUGUAAAAACAGAUGUGAACAAGC--U--GGCUAAUGGCA ...............((.---(((((((.((((-------..--..-----..)))).......--..(((((.(((....))).)))))......)--)--)))))...)). ( -21.70) >consensus GCAACAUUAUUCAAAGCAU___AGCCAGGGGCG_U_____CAG_CA_____GAAGCUGUAAAGC__AAUACAUAUGUAAAAACAGAUGUGAACAAGC__U__GGCUAAUGGCU .......................((((..(((......................(((....)))....(((((.(((....))).))))).............)))..)))). (-15.15 = -15.32 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:05 2006