| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,375,612 – 12,375,707 |
| Length | 95 |
| Max. P | 0.646182 |
| Location | 12,375,612 – 12,375,707 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -18.35 |
| Consensus MFE | -16.91 |
| Energy contribution | -17.10 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12375612 95 - 22407834 ----CCG--CCAACCCU------CUCUGCCUCUUUCUCGUUUAACGUGUGCAAAUGCGUUAACAUAAAUGUAACACGUUUCGCUGUGGUAACA-CAACUGCAACAGCA ----...--........------...............(...(((((((.....((((((......))))))))))))).)(((((.(((...-....))).))))). ( -18.10) >DroSec_CAF1 199705 95 - 1 ----AAG--CCAACCCU------CUCUUCCCCUUUCCCUUUUAACGUGUGCAAAUGCGUUAACAUAAAUGUAACACGUUUCGCUGUGGUAACA-CAACUGCAACAGCA ----...--........------...................(((((((.....((((((......)))))))))))))..(((((.(((...-....))).))))). ( -17.90) >DroSim_CAF1 204967 88 - 1 ----AAG--CCAACCC-------------CCCCUUCUCUUUUAACGUGUGCAAAUGCGUUAACAUAAAUGUAACACGUUUCGCUGUGGUAACA-CAACUGCAACAGCA ----...--.......-------------.............(((((((.....((((((......)))))))))))))..(((((.(((...-....))).))))). ( -17.90) >DroEre_CAF1 198542 107 - 1 UCUCCAGCUCCAACUCUCUCCGCCUCUGCCUCUUUCUCUUUUAACGUGUGCAAAUGCGUUAACAUAAAUGUAACACGUUUCGCUGUGGUAACA-CAACUGCAACAGCA ..........................................(((((((.....((((((......)))))))))))))..(((((.(((...-....))).))))). ( -17.90) >DroYak_CAF1 207864 84 - 1 -----------------------CUCCGCCUCUUCGCCUUUUAACGUGUGCAAAUGCGUUAACAUAAAUGUAACACGUUUCGCUGUGGUAACA-CAACUGCAACAGCA -----------------------...................(((((((.....((((((......)))))))))))))..(((((.(((...-....))).))))). ( -17.90) >DroPer_CAF1 282487 86 - 1 ----------------U------UUCUCCUCCGUUCUCUGGCAACGUGUGCAAAUGCGUUAACAUAAAUGUAACACGUUUCGCUGUGGUAACAACAGCAGCAGCAACA ----------------.------.........(((..((((.(((((((.....((((((......))))))))))))).)(((((.......)))))..))).))). ( -20.40) >consensus _____AG__CCAACCCU______CUCUGCCCCUUUCUCUUUUAACGUGUGCAAAUGCGUUAACAUAAAUGUAACACGUUUCGCUGUGGUAACA_CAACUGCAACAGCA ..........................................(((((((.....((((((......)))))))))))))..(((((.(((........))).))))). (-16.91 = -17.10 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:04 2006