Locus 4321

Sequence ID 2L_DroMel_CAF1
Location 12,368,943 – 12,369,044
Length 101
Max. P 0.649061
window6809

overview

Window 9

Location 12,368,943 – 12,369,044
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.74
Mean single sequence MFE -21.08
Consensus MFE -14.44
Energy contribution -14.95
Covariance contribution 0.50
Combinations/Pair 1.28
Mean z-score -1.65
Structure conservation index 0.69
SVM decision value 0.24
SVM RNA-class probability 0.649061
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12368943 101 + 22407834
AUUGUAUCUGUAUCCGGAUCUCAGCCUGUAAUUAUGGGGCGUAUUGUUUUAUAAUUCCACUGCCCUAACGCCCCCUA-UUUCAGAAUUUCCUUGUGGCAUAU
...(((((..((...(((.......(((.(((...(((((((...((..............))....)))))))..)-)).)))....))).))..).)))) ( -18.84)
>DroSec_CAF1 192994 93 + 1
--------UGUAUCCGCAUCUCUGCCUGUAAUUAUGGGGCGUAUUGUUUUAUAAUUCCACUGCCCCAACGCCCCCUA-UUUCAGCAUUUCCUCGUGGCAUAU
--------.((((((((.....(((.((.(((...(((((((...((..............))....)))))))..)-)).))))).......)))).)))) ( -20.34)
>DroSim_CAF1 198240 93 + 1
--------UGUAUCCGCAUCUCUGCCUGUAAUUAUGGGGCGUAUUGUUUUAUAAUUCCACUGCCCCAACGCCCCCUA-UUUCAGCAUUUCCUCGUGGCAUAU
--------.((((((((.....(((.((.(((...(((((((...((..............))....)))))))..)-)).))))).......)))).)))) ( -20.34)
>DroEre_CAF1 191722 93 + 1
--------UGUAUCCGCAUCGCUGUCUGUAAUUUGGGGGCGUAUGGUUUUAUAAUUCCUCUGUCCCAACGCCCCUUU-UUUCAACAUUUGCUGGUGGCAUAU
--------.((((((((...(((((.((......((((((((.(((..(............)..)))))))))))..-...)))))...))..)))).)))) ( -25.70)
>DroYak_CAF1 201052 94 + 1
--------UGUAUCCACAUCUCUGUCUGUAAUUAGGGGGCGUAUUGUUUUAUAAUUUCACUGCCCCAACGCCCCUUUUUUUCACCAUUUUCUCGUGGCACAU
--------(((..((((.........((.((..(((((((((...((..............))....)))))))))..)).))..........)))).))). ( -19.35)
>DroAna_CAF1 180531 86 + 1
--------UGUAUCUGUAUCUCUGUCUGUAAUUAGGGGGCGUAUUGUUUUAUAAUACCACCCCUCGAGCCCCCCUC-------GCACUU-GUUGCGGCAUAU
--------..............((.(((((((.((((((.(((((((...)))))))..)))).((((.....)))-------)..)).-)))))))))... ( -21.90)
>consensus
________UGUAUCCGCAUCUCUGCCUGUAAUUAGGGGGCGUAUUGUUUUAUAAUUCCACUGCCCCAACGCCCCCUA_UUUCAGCAUUUCCUCGUGGCAUAU
.........((((((((........(((.......(((((((.........................))))))).......))).........)))).)))) (-14.44 = -14.95 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:59 2006