| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,358,747 – 12,358,841 |
| Length | 94 |
| Max. P | 0.853383 |
| Location | 12,358,747 – 12,358,841 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 92.05 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -22.28 |
| Energy contribution | -23.24 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12358747 94 - 22407834 UAUAAUCCUAUUCCGACUCGUAGCCACAUAAACCACACUC-CUGGAAGGGGUGGUUAUCAUCGAGUUAGCCGUGCUCGAACACCUUGCUCUGAGG ................((((.(((......((((((.(((-......)))))))))....((((((.......)))))).......))).)))). ( -24.90) >DroSec_CAF1 182609 94 - 1 UAUAAUCCUCCUCCGACUCGGAGCCACAUAAACCACACUC-CUGGAAAGGGUGGUUAUCAUCGAGUUAGCCGUGCUCGAACACCUUGCUCUGAGG ................((((((((......((((((...(-((....)))))))))....((((((.......)))))).......)))))))). ( -31.90) >DroSim_CAF1 187601 94 - 1 UAUAAUCCUCCUCCGACUCGGAGCCACAUAAACCACACUC-CUGGAAAGGGUGGUUAUCAUCGAGUUAGUCGUGCUCGAACACCUUGCUCGGAGG .........((((((((..((.........((((((...(-((....)))))))))....((((((.......))))))...))..).))))))) ( -32.20) >DroEre_CAF1 181442 93 - 1 UAUAAUCCUUCUCCGACUCGGAGCCACAUAAACCA-ACAUCCUG-AAGGGGUGGUUAUCAUCGAGUUAGACGUGCUCGAACACCUUGCUCUCAGG ................((.(((((......(((((-...(((..-..))).)))))....((((((.......)))))).......))))).)). ( -23.70) >DroYak_CAF1 188867 93 - 1 UAUAAUCCUUCUCCGACUCGGAGCCACACAAACCACACAU-CUG-AAAGGGUGGCUAUCACCGAGUUAGCCGUGCUCGAACACCUUGCUCUGAGG ................((((((((.............(((-((.-...)))))........(((((.......)))))........)))))))). ( -25.70) >consensus UAUAAUCCUCCUCCGACUCGGAGCCACAUAAACCACACUC_CUGGAAAGGGUGGUUAUCAUCGAGUUAGCCGUGCUCGAACACCUUGCUCUGAGG ................((((((((......((((((.....((....)).))))))....((((((.......)))))).......)))))))). (-22.28 = -23.24 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:56 2006