Locus 4318

Sequence ID 2L_DroMel_CAF1
Location 12,355,144 – 12,355,247
Length 103
Max. P 0.562900
window6805

overview

Window 5

Location 12,355,144 – 12,355,247
Length 103
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.75
Mean single sequence MFE -14.12
Consensus MFE -8.16
Energy contribution -8.61
Covariance contribution 0.45
Combinations/Pair 1.06
Mean z-score -2.04
Structure conservation index 0.58
SVM decision value 0.06
SVM RNA-class probability 0.562900
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12355144 103 - 22407834
AUUGAUGCCAUUUAGGAAAUUACUUCCAAUUUACUUUAAAAUUUCUUCAUUUUCCAAUUUCCUGCGUAAGUAAUACCAGCGCUUGCAGCCGCGCCAUCCAUCU-------------
...((((.......(((((........(((((......))))).......))))).......(((....)))......((((........))))....)))).------------- ( -15.16)
>DroPse_CAF1 253315 88 - 1
AAUGAUGCCAUUUAGGAAAUUACUUCCAAUUUACUUUUAAAUUUCUUCAUUUUCCAAUUUCCUGCGUAAGUAAUUUCCCCA---------------UUCGCCC-------------
......((......((((((((((((((..........((((......))))..........)).).)))))))))))...---------------...))..------------- ( -11.35)
>DroEre_CAF1 177901 101 - 1
AACGAUGCCAUUUAGGAAAUUACUUCCCAUUUACUUUUAAAUUUCUUCAUUUUCCAAUUUCCUGCGUAAGUAAUUCCAGCGCUUGCAGCC--GCCAUCCAUCU-------------
...((((.(....((((((((..................................))))))))((((((((.........)))))).)).--).)))).....------------- ( -13.88)
>DroYak_CAF1 185354 101 - 1
AACGAUGCCAUUUAGGAAAUUACUUCCAAUUUACUUUUAAAUUUCUUCAUUUUCCAAUUUCCUGCGUAAGUAAUUCCAGCGCUUGCAGCC--GCCAUCCAUCU-------------
...((((.(.....(((((........((((((....)))))).......)))))......(((((...((.......))...)))))..--).)))).....------------- ( -14.56)
>DroAna_CAF1 166879 112 - 1
AACGAUGCCAUUUAGGAAAUUACUUUCAAUUUACUUUUAAAUUUCUUCAUUUUCCAAUUUCCUGCGAAAGUAAUUUCAGCGCU-GCAGCC---CCAUUCAUCUUCCCCAUCCCAUU
...((((........((((((((((((((((((....))))))...........((......)).)))))))))))).((...-...)).---.....)))).............. ( -16.80)
>DroPer_CAF1 261267 88 - 1
AAUGAUGCCAUUUAGGAAAUUACUUCCAAUUUACUUUUAAAUUUCUUCAUUUUCCAAUUUCCUGCGUAAGUAAUUUCCUCA---------------UUCGCCC-------------
......((.....(((((((((((((((..........((((......))))..........)).).))))))))))))..---------------...))..------------- ( -12.95)
>consensus
AACGAUGCCAUUUAGGAAAUUACUUCCAAUUUACUUUUAAAUUUCUUCAUUUUCCAAUUUCCUGCGUAAGUAAUUCCAGCGCU_GCAGCC___CCAUCCAUCU_____________
...((((.......(((((........((((((....)))))).......))))).......(((....)))..........................)))).............. ( -8.16 =  -8.61 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:56 2006