| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,334,151 – 12,334,258 |
| Length | 107 |
| Max. P | 0.761136 |
| Location | 12,334,151 – 12,334,258 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.28 |
| Mean single sequence MFE | -25.85 |
| Consensus MFE | -17.73 |
| Energy contribution | -18.07 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12334151 107 - 22407834 CCUUCACUCCCCGCC-----CACGGGAUUCAUAAUCUCCUCGGUAAUCUUUUAAUCCAGUCGAGUGAAUUUUGUACUCGAUUGUGCAACAAAGUUGCCAA-AGGCUGUCCAAG---- ((((.....((((..-----..))))...............(((((.((((....(((((((((((.......)))))))))).)....))))))))).)-))).........---- ( -27.40) >DroPse_CAF1 231051 109 - 1 ---CCAACCACCCCA-----CACACGACUCAUAAUCUCUACGGUAAUCUUUUAAUCCAGUCGAGUGAAUUUUGUAGUCGAUUGUGAAACAAAGUUGCCAAAAGGCAGCCCCAGCCCA ---..........((-----((..(((((((.((((((.((((............)).)).)))...))).)).)))))..)))).......((((((....))))))......... ( -23.10) >DroEre_CAF1 156704 110 - 1 --CUCUUUGCCCUCCCACCACCCGGGAUUCAUAAUCUCCUCGGUAAUCUUUUAAUCCAGUCGAGUGAAUUUCGUACUCGAUUGUGCAACAAAGUUGCCAA-AGGCUGUCCAAG---- --......(((.((((.......))))..............(((((.((((....(((((((((((.......)))))))))).)....)))))))))..-.)))........---- ( -28.60) >DroYak_CAF1 163431 107 - 1 CCUUCUUUGCCCGCC-----CCCGGGAUUCAUAAUCUCCCCGGUAAUCUUUUAAUCCAGUCGAGUGAAUUUCGUACUCGAUUGUGCAACAAAGUUGCCAA-AGGCUGUCCAAG---- ......(((..((((-----...((((.........)))).(((((.((((....(((((((((((.......)))))))))).)....)))))))))..-.))).)..))).---- ( -28.70) >DroAna_CAF1 145502 108 - 1 CUCCCAGUCCUCACA--U--CCCUCGAUUCAUAAUCUCCUCGGUAAUCUUUUAAUCCAGUCGAGUGAAUUUUGUACUCGAUUGUGCAACAAAGUUGCCAA-AGGCUGCCCAAG---- ....(((((......--.--.....(((.....))).....(((((.((((....(((((((((((.......)))))))))).)....)))))))))..-.)))))......---- ( -24.50) >DroPer_CAF1 236530 99 - 1 -------------CA-----CACACGACUCAUAAUCUCUACGGUAAUCUUUUAAUCCAGUCGAGUGAAUUUUGUAGUCGAUUGUGAAACAAAGUUGCCAAAAGGCAGCCCCAGCCCA -------------((-----((..(((((((.((((((.((((............)).)).)))...))).)).)))))..)))).......((((((....))))))......... ( -22.80) >consensus ___UCAUUCCCCGCA_____CACGCGAUUCAUAAUCUCCUCGGUAAUCUUUUAAUCCAGUCGAGUGAAUUUUGUACUCGAUUGUGCAACAAAGUUGCCAA_AGGCUGCCCAAG____ .........................................(((((.((((....(((((((((((.......)))))))))).)....)))))))))................... (-17.73 = -18.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:51 2006