| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,333,859 – 12,333,961 |
| Length | 102 |
| Max. P | 0.756385 |
| Location | 12,333,859 – 12,333,961 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -33.31 |
| Consensus MFE | -20.39 |
| Energy contribution | -20.53 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12333859 102 + 22407834 -----UCCCUUUGCUCGCUCGGCUUACACUGCACAAAAAAAAAAGAGCAAUCGCGCUGCUG-----GUGGUGAAAAAAGGCGAGUGCUCUGAGUGGCAGAGAAGUAAAGUCC -----...((((((.(((((.((.......))...........((((((.((((.((....-----...........)))))).)))))))))))))))))........... ( -32.26) >DroSec_CAF1 157752 101 + 1 -----UCCCUUUGCUCGCUCGGCUUACACUGCACGAAAA-AAAAGAGCAAUCGCGCUGCUG-----GUGGUGAAAAAAGGCGAGUGCUCUGAGUGGCAGAGAAGUAAAGUCC -----...((((((.(((((.((.......)).......-...((((((.((((.((....-----...........)))))).)))))))))))))))))........... ( -32.26) >DroSim_CAF1 161918 101 + 1 -----UCCCUUUGCUCGCUCGGCUUACACUGCACGAAAA-AAAAGAGCAAUCGCGCUGCUG-----GUGGUGAAAAAAGGCGAGUGCUCUGAGUGGCAGAGAAGUAAAGUCC -----...((((((.(((((.((.......)).......-...((((((.((((.((....-----...........)))))).)))))))))))))))))........... ( -32.26) >DroEre_CAF1 156436 95 + 1 -----UCUCUUUGCUCGCUCGGCUUACACUG--CAC-AA-AAAAGAGCAAUCGCGCUGG--------UGGUGAAAAAGGCCGAGUGCUCUGAGUGGCAGGGAAGCAAAGUCC -----...(((((((((((((((((.(((..--(.(-(.-....((....))....)))--------..)))....))))))))))(((((.....))))).)))))))... ( -36.20) >DroYak_CAF1 163137 105 + 1 -----UCGCUUCGCUCGCUCGGCUUACACUGCGCAC-AA-AAAAGAGCAAUCGCACUGCUGCUGUGCUGGUGAAAAAAGGCCGGUGCUCUGAGUGGCAGAGAAGUAAAGUCC -----..(((((((..((.(((......))).))..-..-....((....)))).((((..(((..(((((........)))))..)....))..)))).)))))....... ( -34.40) >DroAna_CAF1 145200 95 + 1 ACCUUUGCCUUUGC-CACUGGGCUUACACU---CAAAAA-AUGAAGGCCUCGGCAUU---------GUGACAAAAAA-AUGGAGUGGUCUGAGUGGCGG--GAGCAAAGUCC ..((((((..((((-((((.((....((((---(.....-......((....))...---------....((.....-.)))))))..)).))))))))--..))))))... ( -32.50) >consensus _____UCCCUUUGCUCGCUCGGCUUACACUGCACAAAAA_AAAAGAGCAAUCGCGCUGCUG_____GUGGUGAAAAAAGGCGAGUGCUCUGAGUGGCAGAGAAGUAAAGUCC ........((((((.((((((((((...................))))....((((((((..................))).)))))..))))))))))))........... (-20.39 = -20.53 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:50 2006