Locus 4311

Sequence ID 2L_DroMel_CAF1
Location 12,328,301 – 12,328,394
Length 93
Max. P 0.754493
window6797

overview

Window 7

Location 12,328,301 – 12,328,394
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 88.20
Mean single sequence MFE -27.30
Consensus MFE -21.10
Energy contribution -20.72
Covariance contribution -0.39
Combinations/Pair 1.17
Mean z-score -2.92
Structure conservation index 0.77
SVM decision value 0.48
SVM RNA-class probability 0.754493
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12328301 93 + 22407834
AAUCAGAUUGUGGCCAAA----AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGCGUUUUCC-GGCCACCAAUCCAAAC
.....((((((((((..(----((((((.....)))))))..((((..((((.....)))).))---))....(((.....)))-))))).)))))..... ( -26.00)
>DroSec_CAF1 151312 93 + 1
AAUCAGAUUGUGGCCAAA----AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGCGUUUUCC-GGCCACCAAUCCAAAC
.....((((((((((..(----((((((.....)))))))..((((..((((.....)))).))---))....(((.....)))-))))).)))))..... ( -26.00)
>DroSim_CAF1 155467 93 + 1
AAUCAGAUUGUGGCCAAA----AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGCGUUUUCC-GGCCACCAAUCCAAAC
.....((((((((((..(----((((((.....)))))))..((((..((((.....)))).))---))....(((.....)))-))))).)))))..... ( -26.00)
>DroEre_CAF1 149874 92 + 1
AAUCAGAUUGUGGCCAAA----AACUUCACAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGGGUUUUCC-GGCCAUCGGCCCG-AC
.......(((.((((..(----((((((.....))))))).(((............(((..(((---......)))..)))...-.)))...))))))-). ( -24.69)
>DroYak_CAF1 156497 92 + 1
AAUCAGAUUGUGGCCAAA----AACUUCACAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGGGCUUUCC-GGCCACCAAUCCG-AC
..((.((((((((((..(----((((((.....)))))))................((((((((---......))))))))...-))))).))))).)-). ( -30.50)
>DroAna_CAF1 139538 99 + 1
AAUCAGAUUGUGGCUGAAAAGAAACUUCGCAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCUCUCGCCGUCCGCCGUAAUCGAGGCCA-CAAUUUG-AC
..((((((((((((.......((((((((...))))))))(((.((((.........)))))))((((.((.....))....))))))))-)))))))-). ( -30.60)
>consensus
AAUCAGAUUGUGGCCAAA____AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU___GCACUUGGGCGUUUUCC_GGCCACCAAUCCA_AC
.....((((((((((.......((((((.....)))))).(((.((((.........))))))).....................))))).)))))..... (-21.10 = -20.72 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:48 2006