Locus 431

Sequence ID 2L_DroMel_CAF1
Location 1,270,262 – 1,270,353
Length 91
Max. P 0.616431
window704

overview

Window 4

Location 1,270,262 – 1,270,353
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 82.10
Mean single sequence MFE -27.27
Consensus MFE -18.71
Energy contribution -19.85
Covariance contribution 1.14
Combinations/Pair 1.15
Mean z-score -1.64
Structure conservation index 0.69
SVM decision value 0.17
SVM RNA-class probability 0.616431
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1270262 91 - 22407834
GCCUUCGCAAGUUGCUUAUGUGUUGCAUACUUCAAGGGGCAGCC-U---GCUUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCCC-GUAUGUGU
......(((.(((((((...((..........))..))))))).-)---))....((((((((((.((.....))))))))))))..-........ ( -25.60)
>DroPse_CAF1 43014 87 - 1
GCCUCUGGAAGUUGCUUAUGUGUUGCAUACUUCAAGGAGCCAGA-G---G-CUUAGCUGCUUUCGCAUCAUCAAUCAAAGGCAGCCC-AUAGG---
((((((((..((.((......)).))...(((....))))))))-)---)-)...((((((((..............))))))))..-.....--- ( -27.74)
>DroEre_CAF1 42403 87 - 1
GCCUUUGCAAG---CGUGUGUGUUGCAUACUUCGAGGGGCAGCC-G---GC-UUAGCUGCUUUUGCAUCAUCAAUCAAAGGCGGCAA-GUAUGUGU
.((((((.(((---..(((.....)))..)))))))))(((...-.---((-((.((((((((((.((.....))))))))))))))-)).))).. ( -29.70)
>DroYak_CAF1 31080 92 - 1
GCCUUUGCAAGUUGCUUAUGUGUUGCAUACUUCAAGGGGCAGCCCG---GCUUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCUC-GUAUGUGU
(((.(((.(((((((.........))).)))))))(((....))))---))...(((((((((((.((.....))))))))))))).-........ ( -28.40)
>DroAna_CAF1 54025 90 - 1
GCCUUUGCAGCAGGCUUAUGUGUUGCAUACUUCAAGGAGUCGAC-UUUAGCCUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCCCCAUA-----
((((((((((((((((.....((((...((((....))))))))-...)))))..)))))..(((......)))..)))))).........----- ( -26.70)
>DroPer_CAF1 43508 87 - 1
GCCUUUGGAAGUUGCUUAUGUGUUGCAUACUUCAAGGAGCCAGA-G---G-CUUAGCUGCUUUCGCAUCAUCAAUCAAAGGCAGCCC-AUAGG---
(((((((((((((((.........))).)))))...((((..((-(---(-(......))))).)).))......))))))).....-.....--- ( -25.50)
>consensus
GCCUUUGCAAGUUGCUUAUGUGUUGCAUACUUCAAGGAGCAGCC_G___GCCUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCCC_AUAUG___
(((((((.(((((((.........))).))))))))).))...............((((((((((.((.....))))))))))))........... (-18.71 = -19.85 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:07 2006