| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,307,661 – 12,307,757 |
| Length | 96 |
| Max. P | 0.543585 |
| Location | 12,307,661 – 12,307,757 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.83 |
| Mean single sequence MFE | -34.63 |
| Consensus MFE | -19.64 |
| Energy contribution | -19.87 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12307661 96 - 22407834 AUAUUCCCACUUCCGGCUUAUGCACAUGACUUUAAUCCGGAUCCGGAUGCAGCCGGAAGAAGAGG------------------------CGACCGCUGCCGCCUUAGGGUCACCCAAGCG .....(((.(((((((((...(((...........((((....))))))))))))))))..((((------------------------((........)))))).)))........... ( -36.20) >DroPse_CAF1 195472 118 - 1 AUAUUCCAACUUCCGGCUUAUGCACAUGACUUUAAUCCGGAA--GGCUGCAUCCGGAAGGAGACGAGAUGAGAGCAGAGAAGACGGCCGCUGCCGCUGCCGCCUUAGGGUCACCCAGCCA ..........((((((.(((............))).))))))--(((((..(((....)))(((....((((.((.(...((.((((....)))))).).))))))..)))...))))). ( -38.60) >DroEre_CAF1 128083 90 - 1 AUAUUCCAACUUCCGGCUUAUGCACAUGACUUUAAUCC------GGAUGCAGCCGGAAGAAGAGG------------------------CGACCGCUGCCGCCUUAGGGUCACCCAAGCG .........(((((((((...(((..((.........)------)..))))))))))))..((((------------------------((........)))))).(((...)))..... ( -30.20) >DroYak_CAF1 134686 90 - 1 AUAUUCCAACUUCCGGCUUAUGCACAUGACUUUAAUCC------GGAUGCAGCCGGAAGAAGAGG------------------------CGACCACUGCCGCCUUAGGGUCAUCCAUGCG ....(((..(((((((((...(((..((.........)------)..))))))))))))..((((------------------------((........)))))).)))........... ( -29.80) >DroAna_CAF1 118881 90 - 1 AUAUUCCAACUUCCGGCUUAUGCAUAUGACUUUAAUCC------GGCUGCAGCCGGAAGGCGAUG------------------------CGACCGCUGCCGCCUUAGGGUUACCCAGCCG .............(((((........((((((((((((------(((....)))))).((((..(------------------------(....))...)))))))))))))...))))) ( -30.70) >DroPer_CAF1 200878 118 - 1 AUAUUCCAACUUCCGGCUUAUGCACAUGACUUUAAUCCGGAA--GGCUGUAUCCGGAAGGAGAGCAGAGGAGAGCAGAGAAGACGGCCGCUGCCGCUGCCGCCUUAGGGUCACCCAGCCA ...((((..(((((((.(((............))).))))))--).((((.(((....)))..)))).)))).((....(((.((((.((....)).)))).))).(((...))).)).. ( -42.30) >consensus AUAUUCCAACUUCCGGCUUAUGCACAUGACUUUAAUCC______GGAUGCAGCCGGAAGAAGAGG________________________CGACCGCUGCCGCCUUAGGGUCACCCAGCCG .........((((((((...((((.......................))))))))))))...............................((((.(((......)))))))......... (-19.64 = -19.87 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:39 2006