| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,289,309 – 12,289,402 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 12,289,309 – 12,289,402 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.14 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -18.78 |
| Energy contribution | -18.67 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12289309 93 + 22407834 GCCACCGUCGCAUCCAUCACCGUAUGCGGUGCCAGGUAGGAGUCGCAGAUUCCUCUCAGAUUCCACUCGGUGUUCC----ACCACUUUCC------UC-------CACUU ..(((((......((..(((((....)))))...))..((((((..(((....)))..))))))...)))))....----..........------..-------..... ( -24.50) >DroSec_CAF1 112070 95 + 1 GCCACCGUCGCAUCCAUCACCGUAUGCGGUGCCAGGUAGGAGUCGCAGAUUCCUCUCAGAUUCCACUCGGUGUUCCUUCCCCCAUUUUC--------C-------CAGUU ..(((((......((..(((((....)))))...))..((((((..(((....)))..))))))...))))).................--------.-------..... ( -24.50) >DroSim_CAF1 115166 90 + 1 GCCACCGUCGCAUCCAUCACCGUAUGCGGUGCCAGGUAGGAGUCGCAGAUUCCUCUCAGAUUCCACUCGGUGUUC-----CCCACUUUC--------C-------CACUU ..(((((......((..(((((....)))))...))..((((((..(((....)))..))))))...)))))...-----.........--------.-------..... ( -24.50) >DroEre_CAF1 110413 85 + 1 GCCAUCGGCGCAUCCAUCACCGUAUGCGGUGCCAGGUAGGAGUCGCCGAUUCCUCUCAGAUACCACUCCAUGUUC-----CCCACUUUCC-------------------- ...(((((((..((((((((((....)))))....)).)))..))))))).........................-----..........-------------------- ( -21.10) >DroYak_CAF1 116421 98 + 1 GCCAUCGUCGCAUCCAUCACCGUAUGCGGUGCCAGGUAGGAGUCGCAGAUUCCUCUCAGAUUCCACUCGAUGCUC-----CCCACUUUUCCACUUUCC-------CACUU .........(((((...(((((....)))))...(((.((((((..(((....)))..))))))))).)))))..-----..................-------..... ( -23.90) >DroAna_CAF1 102311 96 + 1 GCCGUCGUCGCAUCCAUCACCGUACGCGGUGCCAGGUAGGAGUUGCAG-UUCCUCUCGGAUGUG--CCCAUCACC-----CCCAACUUCC------UUUUGUUUGAACUU ......(.(((((((..(((((....)))))...(..(((((......-)))))..))))))))--)........-----..........------.............. ( -23.20) >consensus GCCACCGUCGCAUCCAUCACCGUAUGCGGUGCCAGGUAGGAGUCGCAGAUUCCUCUCAGAUUCCACUCGAUGUUC_____CCCACUUUCC_______C_______CACUU ..(((((..........(((((....)))))...(..(((((((...)))))))..)..........)))))...................................... (-18.78 = -18.67 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:20 2006