Locus 4293

Sequence ID 2L_DroMel_CAF1
Location 12,282,619 – 12,282,713
Length 94
Max. P 0.999708
window6766

overview

Window 6

Location 12,282,619 – 12,282,713
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.64
Mean single sequence MFE -19.58
Consensus MFE -18.91
Energy contribution -19.31
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.97
SVM decision value 3.92
SVM RNA-class probability 0.999708
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12282619 94 - 22407834
GAAAUAUUUCGGCUUCGCAUAGUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC
((((((....((((.(((((((((((.((((......)).)))))))...((...........))....))))))...))))...))))))... ( -19.00)
>DroSec_CAF1 105525 94 - 1
GAAAUAUUUCGGCUUCGCAUACUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC
((((((....((((.(((((((..............((((..........))))..............)))))))...))))...))))))... ( -20.29)
>DroSim_CAF1 108589 94 - 1
GAAAUAUUUCGGCUUCGCAUACUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC
((((((....((((.(((((((..............((((..........))))..............)))))))...))))...))))))... ( -20.29)
>DroEre_CAF1 103804 94 - 1
GAAAUAUUUUGGCUUCGCAUACUUUUAGUCACCCACAUGCACAACACACCGCAUCUAUUCACCGCAUUGUGUGCGCAUAGCUUUCUAGUUCGAC
(((.......((((.(((((((..............((((..........))))..............)))))))...))))......)))... ( -17.51)
>DroYak_CAF1 109481 94 - 1
GAAAUAUUUUGGCUUCGCAUACUUUUAGUCGCCCACAUGCAGAAAAUACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCUAC
((((((....((((.(((((((..............((((.(......).))))..............)))))))...))))...))))))... ( -20.79)
>consensus
GAAAUAUUUCGGCUUCGCAUACUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC
((((((....((((.(((((((..............((((..........))))..............)))))))...))))...))))))... (-18.91 = -19.31 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:19 2006