| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,271,306 – 12,271,406 |
| Length | 100 |
| Max. P | 0.618844 |
| Location | 12,271,306 – 12,271,406 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 73.22 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -10.17 |
| Energy contribution | -11.06 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12271306 100 - 22407834 ACUUCUACGAGUGUCCACUGUACUCAAAUC-UUUUACAGUU-------------AUCACACACUAGCACUUACUCCAAGUAGAUAUCGUUG---UUCUUCUCGGAGAAAUCGAAAAU .......((((((...((((((........-...)))))).-------------..))).............((((.((.(((........---.))).)).))))...)))..... ( -18.60) >DroPse_CAF1 144699 108 - 1 ACCUUGAUGAGUCACCGCUGUAACCAAACCCGUUUACAGUUG---UAUCUCACACACACAUA------CUUACUCCAAAUAGAGAUCAUUGGCACUCUUUUCCGAAAAAUCAAAUAU .((.(((((((..((.(((((((.(......).))))))).)---)..)))...........------....(((......)))))))..))......................... ( -17.80) >DroSec_CAF1 94367 94 - 1 ACUUCUACGAGUGUCCACUGUACUCGAAUC-UUUUACAGUU-------------AGCACACA------CUUACUCCAAGUAGAUAUCGUUG---UUCUUCUCGGAGAAAUCGAAAAU .......(((((((..((((((........-...)))))).-------------.))))...------....((((.((.(((........---.))).)).))))...)))..... ( -20.80) >DroSim_CAF1 98987 94 - 1 ACUUCUGCGAGUGUCCACUGUACUCCAAUC-UUUGACAGUU-------------AGCACACA------CUUACUCCAAGUAGAUAUCGUUG---UUCUUCUCGGAGAAAUCGAGAAU ..((((.(((((((..(((((.(.......-...)))))).-------------.))))...------....((((.((.(((........---.))).)).))))...))))))). ( -22.60) >DroEre_CAF1 92317 100 - 1 ----CUACGAGUGCUCACUGUACUCGAAUC-UUUUACAGUUA---UCACCCACUAGCACAGA------CUUACUCCAAGUAGAUGUCGUUG---UUCUUCUCGGAGAAAUCGAAAAU ----...(((((((.....)))))))....-.......((((---........))))...((------.((.((((.((.(((........---.))).)).)))))).))...... ( -20.60) >DroYak_CAF1 98126 101 - 1 ------GCGAGUGCUCACUGUUCUCGAAUC-ACCCACUAGCACACACACACACUCGCACACA------CUUACUCCAAGUAGAUGUCGUUG---UUCUUCUCGGAGAAAUCGAAAAU ------(((((((.....(((.((.(....-.....).)).)))......)))))))...((------.((((.....)))).))(((...---(((((....)))))..))).... ( -20.00) >consensus ACUUCUACGAGUGUCCACUGUACUCGAAUC_UUUUACAGUU_____________AGCACACA______CUUACUCCAAGUAGAUAUCGUUG___UUCUUCUCGGAGAAAUCGAAAAU .......(((((((..((((((............))))))...............)))).............((((.((.(((............))).)).))))...)))..... (-10.17 = -11.06 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:17 2006