| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,264,017 – 12,264,110 |
| Length | 93 |
| Max. P | 0.514476 |
| Location | 12,264,017 – 12,264,110 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -14.99 |
| Energy contribution | -16.43 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12264017 93 - 22407834 UUCCGCCAUUGUU--GGCCAUCGUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGGGGGGCCAAGAUUGGGUGGAGAAUAAAAAA (((((((..(.((--((((...(((((((.....)))))))..((((....((((....)))).)))))))))).)...)))))))......... ( -38.30) >DroSec_CAF1 87224 93 - 1 UUCUGCUUUUGCU--GGCCAUCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUGGGGCCAAGAUUGGGAGGAGAAUAAAAAA ((((.(((((.((--((((....((((((.....))))))...((...((.((((....)))).)))))))).))...))))).))))....... ( -28.10) >DroSim_CAF1 91320 93 - 1 UUCCGCUUUUGCU--GGCCAUCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUGGGGCCAAGAUUGGAAGGAGAAUAAAAAA ((((((....)).--..(((((((((((((..(((........)))..((.((((....)))).)))))))))))).)))..))))......... ( -28.80) >DroEre_CAF1 85301 91 - 1 --CCGCUUUUGCU--GGCCGCCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUAGGGCCAAGAUUGGGAGGAGAAUAAAAAA --((.(((...((--((((....((((((.....))))))........((.((((....)))).))..)))).))...))).))........... ( -24.80) >DroYak_CAF1 90957 93 - 1 UUCCGCUUUUGCU--GGCCGCCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUAGGGCCAAGAUUGGGAGGAGAAUAAAAAA ((((.(((...((--((((....((((((.....))))))........((.((((....)))).))..)))).))...))).))))......... ( -27.00) >DroAna_CAF1 80609 74 - 1 ----CCUUUUCCUUCCACCGUCUUGGUCUCAUUGGGACCAUUACCA-AAAACUGUGACAAAAAUGGGGGAC----------------AUAAAAAA ----........((((.((((..((((((.....))))))((((..-......)))).....)))))))).----------------........ ( -15.60) >consensus UUCCGCUUUUGCU__GGCCAUCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUGGGGCCAAGAUUGGGAGGAGAAUAAAAAA ((((((....))...((((....((((((.....))))))...........((((....)))).....))))..........))))......... (-14.99 = -16.43 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:12 2006