Locus 4286

Sequence ID 2L_DroMel_CAF1
Location 12,256,587 – 12,256,683
Length 96
Max. P 0.995915
window6758

overview

Window 8

Location 12,256,587 – 12,256,683
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 86.75
Mean single sequence MFE -21.54
Consensus MFE -16.92
Energy contribution -17.56
Covariance contribution 0.64
Combinations/Pair 1.06
Mean z-score -3.08
Structure conservation index 0.79
SVM decision value 2.63
SVM RNA-class probability 0.995915
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12256587 96 - 22407834
CCCAUUUUUUUCUUUUUAAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC
.......................(((((((((((((....)))))................((((......))))..))))))))........... ( -20.60)
>DroSec_CAF1 79780 92 - 1
CACAUUUUU----UUUUAAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUAGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC
.........----..........(((((((((((((....)))))...............(((((......))))).))))))))........... ( -21.00)
>DroEre_CAF1 77475 89 - 1
CCCAUUU-------UUUAAGCAAGUCAAGUGGGAAGCAAGUCUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC
.......-------.........(((((((((((........)))................((((......))))..))))))))........... ( -18.10)
>DroYak_CAF1 78950 92 - 1
CCCAUUUUU----UUUUGAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC
.........----..........(((((((((((((....)))))................((((......))))..))))))))........... ( -20.60)
>DroAna_CAF1 72894 84 - 1
-------CA----UGUUAAGGAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACGGCAACGU-AACGCGUCCUUAUCUUCUCUUGACAUAUUUUUCAC
-------.(----(((((((((((..((((((((((....))))))).(((((....)))-))......)))..)))).))))))))......... ( -27.40)
>consensus
CCCAUUUUU____UUUUAAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC
.......................(((((((((((((....)))))................((((......))))..))))))))........... (-16.92 = -17.56 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:11 2006