Locus 4281

Sequence ID 2L_DroMel_CAF1
Location 12,238,366 – 12,238,462
Length 96
Max. P 0.520589
window6751

overview

Window 1

Location 12,238,366 – 12,238,462
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 75.31
Mean single sequence MFE -20.06
Consensus MFE -7.78
Energy contribution -10.98
Covariance contribution 3.20
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.39
SVM decision value -0.03
SVM RNA-class probability 0.520589
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12238366 96 - 22407834
G--AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAAAAAAAAUUGCAAGAGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCUGCGCUU
.--.................(((((((.((((((((............))))).((((...((.((.....)).)).....))))))).))))))).. ( -22.90)
>DroSec_CAF1 61774 94 - 1
G--AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAA--AAAACGGCAAGGGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCGGCGCUU
.--..............(((.(((((....))))).)))...--...................(((((((((((((.....))))).))).))))).. ( -22.90)
>DroSim_CAF1 63147 94 - 1
G--AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAA--AAAAUGGAAAGAGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCGGCGCUU
.--..............(((.(((((....))))).)))...--...................(((((((((((((.....))))).))).))))).. ( -22.90)
>DroYak_CAF1 60915 90 - 1
G--AAAACUAAGAGGAAUGUGCGCGGAAAACUCAGA---GAA--AAAACUGCAAGGGAAAAUCGCGCUAGACGGG-AAAACUCUCGUUCUCUGGGCUU
.--....((.((((......((((((....(((((.---...--....)))...)).....))))))..((((((-(....))))))))))).))... ( -21.30)
>DroAna_CAF1 56821 77 - 1
AAUAAAAAUAAGAUGGAUG--------AUGCUACAAAUGAAA--AAAAU---------AAGUCGCACUAGA--GGAAAGCGCCUCAAAGCAUGAACUU
..............((.(.--------(((((..........--.....---------.((.....)).((--((......))))..))))).).)). ( -10.30)
>consensus
G__AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAA__AAAAUGGCAAGAGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCUGCGCUU
.....................(((((....)))))............................((((..(((((((.....)))))))....)))).. ( -7.78 = -10.98 +   3.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:05 2006