| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,208,865 – 12,208,984 |
| Length | 119 |
| Max. P | 0.512470 |
| Location | 12,208,865 – 12,208,984 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.28 |
| Mean single sequence MFE | -37.05 |
| Consensus MFE | -26.24 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12208865 119 - 22407834 UACCGGC-AUAGUCACUACUGGCAUAUAAAUCGGCCAACAAAUUGUAAGACACCACACGAAUUUCAUUCGAUUCGCUCAAAGAAUUCGUGGUGUGCCUUUGGCGAUCUUGGAAUGGACAA ..(((.(-(..(((.(((..(((.(((((...(.....)...)))))..(((((((.(((((...)))))((((.......))))..))))))))))..))).)))..))...))).... ( -29.40) >DroSec_CAF1 37754 119 - 1 UACCGGC-AUAGUCACUACUGGCAUAUAAAUCGGCCAACAGAUUGUAAGACACAACACGAAUUUCAUUGGGUUCGCUCAACGAAUUCGUGGUGUGCCUGUGGCGAUCUUGGAAUGGACAA ..(((.(-(..(((.((((.(((((((.((((........))))...........(((((((((..(((((....))))).)))))))))))))))).)))).)))..))...))).... ( -38.70) >DroSim_CAF1 35212 119 - 1 UACCGGC-AUAGUCACUACUGGCAUAUAAAUCGGCCAACAGAUUGUAGGACACCACACGAAUUUCAUUGGGAUCGCUCAAAGAAUUCGUGGUGUGCCUGUGGCGAUCUUGGAAUGGACAA ..(((.(-(..(((.((((.(((((((.....((((.((.....)).))...)).(((((((((..(((((....))))).)))))))))))))))).)))).)))..))...))).... ( -39.10) >DroEre_CAF1 36048 119 - 1 UGCCGGC-AUAGUCACUACUGGCAUAUAAAUCGGCCAACAGAUUGUAGGACACCACCCGAAUCUCAUUGGGUUCGCCCAAAAAGUUCGGGGUGUGCCUGUGGCGAUCUUGGAACGGACAA (((((.(-(..(((.((((.(((((((.....((((.((.....)).))...)).((((((.((..(((((....)))))..))))))))))))))).)))).)))..))...))).)). ( -45.90) >DroYak_CAF1 36548 119 - 1 UGCCGGC-AUAGUCACUACUGGCAUACAGAUCGGCCAACAGAUUGUAGGACACCACCCGCAUCUCAUGGGGUGCGCUCAAAGAGUUUGGCGUGUGCCUGUGGCGAUCUUGGAAUGGACAU (((((.(-(..(((.((((.(((((((.((((........))))((..(((......(((((((....)))))))........)))..))))))))).)))).)))..))...))).)). ( -39.04) >DroAna_CAF1 35063 120 - 1 UUCCGGGAGUAGUCACUGUCUGCGUACAAGUCCGCCAGGAGGUUAUAAGUCACUACCCGUAUUUCGUCGGAGCCUUUCAGGAAUGUCGGUGUGCACUUUUGACGCGUUUCGAAGGGACAC .((((((.(((((.(((.((((((........)).))))........))).)))))))(.....)..))))(((((((.((((((.((..............)))))))))))))).).. ( -30.14) >consensus UACCGGC_AUAGUCACUACUGGCAUAUAAAUCGGCCAACAGAUUGUAAGACACCACACGAAUUUCAUUGGGUUCGCUCAAAGAAUUCGGGGUGUGCCUGUGGCGAUCUUGGAAUGGACAA ..(((.....((((.((((.(((((((.((((........))))...........((((((.(((.(((((....))))).)))))))))))))))).)))).)).)).....))).... (-26.24 = -26.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:53 2006