| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,205,438 – 12,205,535 |
| Length | 97 |
| Max. P | 0.770772 |
| Location | 12,205,438 – 12,205,535 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.72 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -9.94 |
| Energy contribution | -10.63 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12205438 97 - 22407834 GAGUGGAAAAAAAACCGAAAGAAAUUCAAUGAGGCUGAAAAUUUCCUGGCUCGAUGCCAAUUGAAGGCA-----AAGAA-AGAAAACAAAACUCGAGUUUCUA ...(((........)))..((((((((..((((.(.((.....))..).)))).((((.......))))-----.....-..............)))))))). ( -18.70) >DroPse_CAF1 56477 85 - 1 AAGG--A---AAAUCAAGAAGAAAUUCAAUGAGGCUGAAAAUUUUCUGGCCAAAUGCCAAUUGAAGGCA-----AA----ACA----AAAACUCACGUUCCUA .(((--(---(......(((....)))..((((((((((....))).))))...((((.......))))-----..----...----.....)))..))))). ( -19.70) >DroSec_CAF1 34299 97 - 1 GAGCG-AAAAAUAACCCAAAGAAAUUCAAUGAGGCUGAAAAUUUGCUGGCUCGAUGCCAAUUGAAGGCA-----AUGAAAACAAAACAAAACUCGAGUUUCUA .....-.............((((((((..((((.(............).)))).((((.......))))-----....................)))))))). ( -17.50) >DroEre_CAF1 32672 96 - 1 GAGCA-AGAAAUACCCCAAAGAAAUUCAAUGAGGCUGAAAAUUUCCUGGCUCGAUGCCAAUUGAUGCCA-----AAGAA-ACAAAACAAAACUCGAGUUUCUA .....-.............((((((((...(((..((....((((.(((((((((....))))).))))-----..)))-).....))...))))))))))). ( -19.30) >DroYak_CAF1 33083 96 - 1 GAGCG-AAAAAUACCCCAAAGAAAUUCAAUGAGGCUGAAAAUUUCCUGGCCCGAUGCCAAUUGAAGGCA-----AAGAA-ACAAAACAAAACUCGAGUUUCUA .....-.............((((((((..((.((((...........)))))).((((.......))))-----.....-..............)))))))). ( -18.00) >DroAna_CAF1 31949 92 - 1 ----------AAGACGAGAAGCAAUUUAAUGAGGCUGAAAAUCUUCUGGCCCAGAGCCAAUCAAUGACACACAAAAGAA-ACAAAACAAAACUCACGUUUCUA ----------......((((((........((((.(....).))))((((.....))))....................-................)))))). ( -13.60) >consensus GAGCG_AAAAAAAACCCAAAGAAAUUCAAUGAGGCUGAAAAUUUCCUGGCCCGAUGCCAAUUGAAGGCA_____AAGAA_ACAAAACAAAACUCGAGUUUCUA ...................((((((((.....((((...........))))....(((.......)))..........................)))))))). ( -9.94 = -10.63 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:51 2006