Locus 4267

Sequence ID 2L_DroMel_CAF1
Location 12,194,865 – 12,194,966
Length 101
Max. P 0.751350
window6733

overview

Window 3

Location 12,194,865 – 12,194,966
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 72.03
Mean single sequence MFE -19.89
Consensus MFE -12.82
Energy contribution -13.30
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.64
SVM decision value 0.48
SVM RNA-class probability 0.751350
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12194865 101 - 22407834
UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGUUUUGCCGUUGCAGUAGUUUUUU-UCCCGCACACUAGGAAAAAAAAUAGGGAAACUUUACAAAAUUCA
.(((..((((((.(((..(((.((.....)).))).))).)))))).(((.((((((-(((.........)))))))))..(((....))))))....))). ( -24.60)
>DroSec_CAF1 23785 100 - 1
UGAAAAGCAGCGACAAUUGCAAACAUCUUGUCUGUUUCGCCGUUGCAGUAGUUUUUCCUUUACCACACUAGAAAAAAAAAUGGGGAUACUUUACA--AUUCA
.(((..((((((.(....(((.((.....)).)))...).)))))).((((....(((((.....................)))))....)))).--.))). ( -17.60)
>DroSim_CAF1 21681 101 - 1
UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGUUUCGCCGUUGUAGUAGUUUUUCAUUUAGCACACUAGGAAA-AAAUUGGGGAAACUUUACAAAAUUCA
((((((((.((.(((((.(((((((.......))))).)).))))).)).))))))))............(((..-.....(((....))).......))). ( -21.94)
>DroEre_CAF1 21813 78 - 1
UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGCUUCGCUGUUGCAGCAGUUUUUCUGCCGGCUAAAUUCAAAA-CGA-----------------------
((((.((((((((.....(((.((.....)).))).))))))))((.((((.....))))..))....))))...-...----------------------- ( -22.10)
>DroYak_CAF1 22394 81 - 1
UGAAAAGCAGCGACAAUUGCAAACAU-UCGUCUGCUUCACAGUUGCAGUAGUUCUUCAUCCAGCUAAAUUUAAAA-CGA-------------------UCAA
(((...(((((.......(((.((..-..)).)))......)))))..(((((........))))).........-...-------------------))). ( -13.22)
>consensus
UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGUUUCGCCGUUGCAGUAGUUUUUCAUCCAGCACACUAGAAAA_AAA_U_GGGA_ACUUUACA__AUUCA
.(((((((.((..((((.(((((((.......))))).)).))))..)).)))))))............................................. (-12.82 = -13.30 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:48 2006