Locus 4265

Sequence ID 2L_DroMel_CAF1
Location 12,192,206 – 12,192,297
Length 91
Max. P 0.551773
window6730

overview

Window 0

Location 12,192,206 – 12,192,297
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.73
Mean single sequence MFE -26.67
Consensus MFE -18.40
Energy contribution -18.02
Covariance contribution -0.39
Combinations/Pair 1.25
Mean z-score -1.40
Structure conservation index 0.69
SVM decision value 0.04
SVM RNA-class probability 0.551773
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12192206 91 - 22407834
---AUGUGUGGGUUCGGGAGCAAGU----UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU
---.......((((((..(((((..----(((.....(((((((((.(((.....)))))))).)))).)))..)))))..)).)))).......... ( -25.30)
>DroPse_CAF1 32455 96 - 1
C--AUGUAUUUAUGUACGAGAAUGUCGGUCGCUUUUGCAACAGUGUCAUAUGUGUUGCACACCAGUUGAUGAUGUUGCUGACGCUGCCAGGACACGCC
.--.(((((....))))).(..(((((((.((.((.((((((..((((...(((.....)))....))))..)))))).)).)).)))..))))..). ( -26.40)
>DroSec_CAF1 20734 91 - 1
---AUGUGUGGGUUCGGGAGAAAGU----UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU
---...(.(((.(((....)))...----...((..((((((..((((...(((.....)))....))))..))))))..))....))).)....... ( -25.40)
>DroSim_CAF1 19022 91 - 1
---AUGUGUGGGUUCGGGAGAAAGU----UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU
---...(.(((.(((....)))...----...((..((((((..((((...(((.....)))....))))..))))))..))....))).)....... ( -25.40)
>DroYak_CAF1 19669 94 - 1
UAUAUGUGUGGGUUCGGGAGAAAGU----UUAGUUGGCAGCAGCGUCGUAUGUGUUGCACACUAGUUGACGAUGUUGCUGACGUAGCCAGGAGAGGAU
......(.(((.(((....)))...----...((..((((((.(((((...(((.....)))....))))).))))))..))....))).)....... ( -29.30)
>DroPer_CAF1 38308 96 - 1
A--AUGUAUUUAUGUACGAGUAUGUCGGUCGCUUUUGCAACAGUGUCAUAUGUGUUGCACACCAGUUGAUGAUGUUGCUGACGCUGCCAGGACACGCC
.--.(((((....))))).(..(((((((.((.((.((((((..((((...(((.....)))....))))..)))))).)).)).)))..))))..). ( -28.20)
>consensus
___AUGUGUGGGUUCGGGAGAAAGU____UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU
................................((..((((((.(((((...(((.....)))....))))).))))))..))................ (-18.40 = -18.02 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:45 2006