Locus 4264

Sequence ID 2L_DroMel_CAF1
Location 12,191,964 – 12,192,060
Length 96
Max. P 0.500000
window6729

overview

Window 9

Location 12,191,964 – 12,192,060
Length 96
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -19.24
Consensus MFE -14.06
Energy contribution -14.46
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.73
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12191964 96 - 22407834
CC-ACCGAUUUCC-------CCUCGUGCCACACCCACCAAUCUUAUUUUCCAGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG
..-..........-------....((((........................((((((((....))))))))...(((((.......))))).)).))...... ( -16.30)
>DroSec_CAF1 20485 103 - 1
CC-ACUGAUUUUCCACCCCUCCUUGUACCACUACGACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG
..-...................(((((....)))))................((((((((....))))))))...(((((.......))))).((.....)).. ( -16.20)
>DroSim_CAF1 18773 103 - 1
CC-ACUGAUUUUCCACCCCUCCUCGUACCACUACGACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUCUGCUACUUGCCG
..-...................(((((....)))))................((((((((....))))))))....((((.......))))..((.....)).. ( -17.50)
>DroEre_CAF1 18735 102 - 1
CUCCC-GGCUCCCGGCCCC-CCGGCUGCCACUCCCACCCAGCUUAUUUUCCCGCACGACGUCAUCGUUGUGUACUAAGCGUUAUUUUCGCCUUGCUACUUGCCG
.....-(((..((((....-))))..)))..........(((..........((((((((....)))))))).....(((.......)))...)))........ ( -28.00)
>DroYak_CAF1 19422 102 - 1
CCCACUGAUUUUCCACCCC-CCAGCUGCCAGUCCCACCAACCUCAU-UUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG
...................-......((.(((..((..........-.....((((((((....))))))))...(((((.......)))))))..))).)).. ( -18.20)
>consensus
CC_ACUGAUUUUCCACCCC_CCUCGUGCCACUCCCACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG
....................................................((((((((....))))))))...(((((.......))))).((.....)).. (-14.06 = -14.46 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:44 2006