Locus 4263

Sequence ID 2L_DroMel_CAF1
Location 12,191,478 – 12,191,571
Length 93
Max. P 0.942431
window6728

overview

Window 8

Location 12,191,478 – 12,191,571
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.18
Mean single sequence MFE -27.19
Consensus MFE -19.41
Energy contribution -19.80
Covariance contribution 0.39
Combinations/Pair 1.24
Mean z-score -2.18
Structure conservation index 0.71
SVM decision value 1.33
SVM RNA-class probability 0.942431
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12191478 93 + 22407834
CA------CAUCAUCCAACAGAGUUCUUCACACUUAGUGUGGGUAACCAGGCUUGAAGUGAAGUUCAAUAGAAUUUGAGCCAUAGGCUUAGACUGUUUU
..------........(((((.(..((((((....(((.(((....))).)))....))))))..).......((((((((...))))))))))))).. ( -28.80)
>DroSec_CAF1 19983 99 + 1
CACUGACUCAUCAUCCAACAGAGUUCUUCACACUUAGUGUGGGUAACCUGGCUUGAAGUGAGGUUCAAUAGAGUUUGAGCCAUAGGCUUAGGCUGUUUU
......(((((.......(((.(((.(((((((...))))))).)))))).......))))).........((((((((((...))))))))))..... ( -29.04)
>DroSim_CAF1 18250 99 + 1
CACUGACUCAUCAUCCAACAGACUUCUUCACACUUAGUGUGGGUAACCAGGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCAUAGGCUUAGACUGUUUU
................(((.((...((((((....(((.(((....))).)))....)))))).)).....((((((((((...))))))))))))).. ( -28.50)
>DroEre_CAF1 18294 99 + 1
CCCAGAUUCAUCACAUAACAGAGGUCUUCACACUUCGUGUGGGUAACCAAGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCCUAGGCUUAUAUUGUUUU
................(((((((((((...(((((((..(((....)))....)))))))..((((((......))))))...))))))...))))).. ( -22.90)
>DroYak_CAF1 18912 99 + 1
UCUCGACUCAUCAUUCAACAGAGUUAUUCACACUUGGUGUGGGUAACCAAGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCCUAGGCUUAGACUGUAUU
....(((((((..((((((...(((((((((((...)))))))))))...).)))))))).)))).((((.((((((((((...)))))))))).)))) ( -32.30)
>DroAna_CAF1 19086 73 + 1
---------------GCAC-----------CACUAAGUGUGGGCAACCAAGCUCGAAGUGAAGUUCAAUAGAGAUUGAGUUUCAGGCUUAGGCUGUUUU
---------------((.(-----------(((.....))))))..(((((((.....((((..(((((....)))))..))))))))).))....... ( -21.60)
>consensus
CAC_GACUCAUCAUCCAACAGAGUUCUUCACACUUAGUGUGGGUAACCAAGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCAUAGGCUUAGACUGUUUU
..............................((((((((.(((....))).)))..)))))...........((((((((((...))))))))))..... (-19.41 = -19.80 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:43 2006