Locus 4262

Sequence ID 2L_DroMel_CAF1
Location 12,183,482 – 12,183,596
Length 114
Max. P 0.815251
window6727

overview

Window 7

Location 12,183,482 – 12,183,596
Length 114
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 82.39
Mean single sequence MFE -21.95
Consensus MFE -15.40
Energy contribution -15.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.36
Structure conservation index 0.70
SVM decision value 0.66
SVM RNA-class probability 0.815251
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12183482 114 + 22407834
ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCCCAAGCACCAA---GAGAAUCCGACAGACAGAGAAG
...((((.((........)).))))...((((...(((((-(..((((((((......))))))))...))))..(((((((.(.........---).)))).)))))...))))... ( -21.60)
>DroVir_CAF1 12494 90 + 1
ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCGGGGCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUUC----------------------ACACACA------
...((((.((........)).)))).(((.....)))(((((..((((((((......))))))))..)))))..........----------------------.......------ ( -23.10)
>DroPse_CAF1 21242 95 + 1
ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCC----------------------ACACACAGAAAUG
...((((.((........)).))))....(((..((((((-(..((((((((......))))))))...))))....(....)----------------------.)))..))).... ( -17.00)
>DroMoj_CAF1 12558 97 + 1
ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCGGGGCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUUCAG-C---CAA---C--------ACACACA------
...((((.((........)).)))).(((.....)))(((((..((((((((......))))))))..)))))............-.---...---.--------.......------ ( -23.10)
>DroAna_CAF1 8986 117 + 1
ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCUCGAGCACCGAGGAGGGAAAGCGUCAGACAGAAGGG
...((((.((........)).)))).(..(((...(((((-(..((((((((......))))))))..)).((.(((..((((((.....))))))..))).))))))...)))..). ( -29.90)
>DroPer_CAF1 20363 95 + 1
ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCC----------------------ACACACAGAAAAG
...((((.((........)).))))....(((..((((((-(..((((((((......))))))))...))))....(....)----------------------.)))..))).... ( -17.00)
>consensus
ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG_GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCC______________________ACACACAGAAA_G
...((((.((........)).)))).(((.....)))(((.(..((((((((......))))))))..).)))............................................. (-15.40 = -15.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:42 2006