| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,250,638 – 1,250,738 |
| Length | 100 |
| Max. P | 0.630257 |
| Location | 1,250,638 – 1,250,738 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.65 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -18.42 |
| Energy contribution | -18.43 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1250638 100 - 22407834 GGUUUGUUUUUGUCUGCUGGCAUUGCGCUUUUUCCCCGCUCCAUCUGCCAGGAGGAUAUCUCCCUUUGACUGGUCCUCGACAAUUACGACUGUCGCCCCC (((((((..(((((..((((((..(((.........)))......))))))((((((.((.......))...)))))))))))..)))).....)))... ( -29.30) >DroSec_CAF1 10440 96 - 1 GGUUUGUUUUUGUCUGCUGGCAUUGCGCUUUUUC-CCGCUCCAUCUGCCAG---GACAUCUCCCUUUGACUGGUCCUCGACAAUUACGACUGUCGCCCCC (((((((..(((((...(((((..(((.......-.)))......)))))(---(((.((.......))...))))..)))))..)))).....)))... ( -23.60) >DroEre_CAF1 23484 96 - 1 GGUUUGUUUUUGUCUGCUGGCAUUGCGCUUUUUC-CCGCUCCAACUGCCAG---GAUAUCUCCCUUUCACUGGUCCUCGACAAUUACGACUGUCGCCCCC (((((((..(((((..(((((((((.((......-..))..))).))))))---........((.......)).....)))))..)))).....)))... ( -22.60) >DroYak_CAF1 11058 86 - 1 GGUUUGUUUUUGUCUGCUGGCAUUGCGCUUUUUC-CCGCUCCAUCUGCCAG---GAUAACUCCCUUUCACUGGUCCUCGACAAUUACGAC---------- ...((((..(((((..((((((..(((.......-.)))......))))))---........((.......)).....)))))..)))).---------- ( -20.20) >consensus GGUUUGUUUUUGUCUGCUGGCAUUGCGCUUUUUC_CCGCUCCAUCUGCCAG___GAUAUCUCCCUUUCACUGGUCCUCGACAAUUACGACUGUCGCCCCC ...((((..(((((..((((((..(((.........)))......))))))...........((.......)).....)))))..))))........... (-18.42 = -18.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:55 2006