| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,173,577 – 12,173,673 |
| Length | 96 |
| Max. P | 0.873987 |
| Location | 12,173,577 – 12,173,673 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.30 |
| Mean single sequence MFE | -30.77 |
| Consensus MFE | -16.17 |
| Energy contribution | -16.59 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12173577 96 + 22407834 UUGUGGCUCAUCUUCUGCGGCAAUAGGUGGAUCCA-------CCUGCUUCAGCUGUAGCCAAUGCCACGC----CCCAUUUGCCACAAGGCUGAUCAGAUAGUAUAA------- ..(((((.......(((((((..((((((....))-------)))).....))))))).....)))))..----.......(((....)))................------- ( -29.60) >DroSec_CAF1 370 96 + 1 UUGUGGCUCAUCUCCUGCGGCAAUAGGUGGAUCCA-------CCUGCUCCAGCUGUAGUCAAUGCCACGC----CCCAUUUGCCACAAGGCUGACCAAAAAGUAGAA------- ..(((((.......(((((((..((((((....))-------)))).....))))))).....)))))..----.......(((....)))................------- ( -29.60) >DroSim_CAF1 370 96 + 1 UUGUGGCUAAUCUCCUGCGGCAAUAGGUGGAUCCA-------CCUGCUCCAGCUGUAGCCAAUGCCACGC----CCCAUUUGCCACAAGGCUGACCAAAAAGUAUAA------- ..(((((.......(((((((..((((((....))-------)))).....))))))).....)))))..----.......(((....)))................------- ( -29.60) >DroEre_CAF1 370 103 + 1 UUGUGGCCCAUCUGCUGCGGCAAUAGGUGGAUACG-------CCAGCUCCAGUUGUAGCCAAUGCCACGC----CUCAUCCGCCACAAGACUGUCCAGGAACAGGAAAACAUCC ..(((((......((((((((...((.(((.....-------))).))...))))))))....))))).(----((..(((...(((....)))...)))..)))......... ( -30.70) >DroYak_CAF1 370 103 + 1 UUGUGGCUCAUCUGCUGCGGCAAUAGGUGGUUCCA-------CCUGCUCCAGUUGUAGCCAAUGCCACGC----CUCAUUUGCCACAAGACUGUCCAGUAAAUGGAAAGCAUAC ..(((((......((((((((..((((((....))-------)))).....))))))))....)))))((----.((((((((.(((....)))...))))))))...)).... ( -34.70) >DroAna_CAF1 370 100 + 1 UGGUGGCGCAUUUUUUGCGGCAAUAGAUGCACGGGAUGGGAUUCUUUUCUACCCGUAGCCAAUGCCCCUCGUCGCCCAUUUUCUAAAAGAUUUGUCAAUU-------------- .(((((((((.....)))((((......(((((((.(((((.....)))))))))).))...))))....))))))........................-------------- ( -30.40) >consensus UUGUGGCUCAUCUCCUGCGGCAAUAGGUGGAUCCA_______CCUGCUCCAGCUGUAGCCAAUGCCACGC____CCCAUUUGCCACAAGACUGACCAAAAAGUAGAA_______ (((((((...........(((.((((.((((................)))).)))).)))((((............)))).))))))).......................... (-16.17 = -16.59 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:38 2006