| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,162,965 – 12,163,072 |
| Length | 107 |
| Max. P | 0.573212 |
| Location | 12,162,965 – 12,163,072 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 73.45 |
| Mean single sequence MFE | -37.58 |
| Consensus MFE | -23.39 |
| Energy contribution | -24.20 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12162965 107 - 22407834 C----UGGCAAACC--AAAUCGGAUGCGGAUACCCACCUGAAUGGCCAGUGGUAGUUGGCCAAACAUGGCUCCGGACCCGUGCACGUGUCGCAGCCGGGGGCGCAGGGCAAAC .----(((....))--).......(((((....)).((((..(((((((......))))))).....(.((((((...((.((....))))...)))))).).)))))))... ( -36.40) >DroVir_CAF1 47695 91 - 1 --------------------CU--AGUCCAAACUCACCUGAAUGGCCAAUGAUAAUUGGCCAGACAGGGCUCGGGCCCGGUGCAGGUGUCGCAGCCGGGUGCGCAAGGCAAAC --------------------..--............((((..((((((((....))))))))..))))(((((.(((((((((.......))).)))))).))...))).... ( -41.60) >DroGri_CAF1 41106 90 - 1 ---------------------U--UGCCCAGACGCACCUGAAGGGCCAAUGAUAGUUGGCCAGACAGGGCUCGGGACCGGUGCAAGUGUCACAGCCGGCGGCGCAUUGCAAAC ---------------------.--..(((.((.((.((((...(((((((....)))))))...))))))))))).....((((((((((.(.....).))))).)))))... ( -37.70) >DroEre_CAF1 44155 106 - 1 C----UGGCCAAUA--AAAU-GCACACGGAUACCCACCUGAAUGGCCAGUGGUAGUUGGCCAAACAUGGCUCCGGACCCGUGCACGUGUCGCAGCCGGGGGCGCAGGGCAAAC .----..(((....--...(-((((.((((...(((..((..(((((((......)))))))..))))).)))).....))))).(((((.(.....).)))))..))).... ( -36.20) >DroYak_CAF1 38701 111 - 1 CUGACUGGCAAAUA--AAAUCGGACCCGGAUACCCACCUGAAUGGCCAGUGGUAGUUGGCCAAACACGGCUCCGGACCCGUGCACGUGUCGCAGCCGGGGGCGCAGGGCAAAC .((.(((((.....--...(((....)))...(((.......(((((((......)))))))....(((((.((.((.((....)).)))).)))))))))).)))..))... ( -37.30) >DroAna_CAF1 42401 101 - 1 C----CAUUAAAUAAACAAUUUG--------UCCCACCUGAACGGCCAAUUGAAGUUGGCCAGACAUGGCUCCGGACCGGUACACGUGUCGCAGCCGGGGGCACAGGACAAAC .----..............((((--------(((.........(((((((....))))))).....((.((((((..((..(....)..))...)))))).))..))))))). ( -36.30) >consensus C____UGGCAAAUA__AAAUCGG_CGCGGAUACCCACCUGAAUGGCCAAUGGUAGUUGGCCAAACAUGGCUCCGGACCCGUGCACGUGUCGCAGCCGGGGGCGCAGGGCAAAC ....................................((((...(((((((....)))))))......(.((((((....((((....).)))..)))))).).))))...... (-23.39 = -24.20 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:35 2006