| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,150,517 – 12,150,611 |
| Length | 94 |
| Max. P | 0.638703 |
| Location | 12,150,517 – 12,150,611 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 90.01 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -22.07 |
| Energy contribution | -22.48 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12150517 94 + 22407834 CAACUAAAACAUCCAACUGACAACUUCACUUAUUCCAGUUGAGUUGUGACAUCCUGACCGCAGGCAGUUGGCAAAUGAAUUCAAUGGGUGGG-GG ...(((...(((((((((((((((((.(((......))).))))))).....((((....)))))))))))....((....)))))..))).-.. ( -24.10) >DroSec_CAF1 35794 94 + 1 CAACUAAAACAGCCAACUGACGACUUCACUUAUUCCAGUUGAGUUGUGACAUCCUGACCGCAGGCAGUUGGCAAAUGAAUUCAAUGGGUGGG-GG ...(((...(((((((((((((((((.(((......))).))))))).....((((....))))))))))))...((....)).))..))).-.. ( -28.20) >DroSim_CAF1 32447 95 + 1 CAACUAAAACAGCCAACUGACAACUUCACUUAUUCCAGUUGAGUUGUGACAUCCUGACCGCAGGCAGUUGACAAAUGAAUUCAAUGGGUGGGGGG (..(((...(((.(((((((((((((.(((......))).))))))).....((((....)))))))))).)...((....)).))..)))..). ( -22.50) >DroEre_CAF1 31672 93 + 1 CAACUAAAACAGCCAACUGACAACUUCACUUAUUCCAGUUGAGUUGUGACAUCCUGACCGCAGGCAGUUGGCAAAUGAAUUCAAUGGGAGGG--G ...((....(((((((((((((((((.(((......))).))))))).....((((....))))))))))))...((....)).))....))--. ( -27.50) >DroYak_CAF1 26244 93 + 1 CAACUAAAACAGCCAACUGACAACUUCACUUAUUCCAGUUGAGUUGUGACAUCCUGACCGCAGGCAGUUGGCAAAUGAAUUCAGUGGUUGGG--G ((((((.....(((((((((((((((.(((......))).))))))).....((((....))))))))))))...((....)).))))))..--. ( -31.80) >DroAna_CAF1 30422 83 + 1 CAACUAAAACAGCCAACUGACAACUUCACUUAUUCCAGUUGAGUUGUGACGUUCUGACCGCAGGCGGUCAGAAAAAUAAGGCA------------ ...........(((.....(((((((.(((......))).)))))))....(((((((((....)))))))))......))).------------ ( -29.70) >consensus CAACUAAAACAGCCAACUGACAACUUCACUUAUUCCAGUUGAGUUGUGACAUCCUGACCGCAGGCAGUUGGCAAAUGAAUUCAAUGGGUGGG__G ...........(((((((((((((((.(((......))).))))))).....((((....))))))))))))....................... (-22.07 = -22.48 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:29 2006