Locus 4248

Sequence ID 2L_DroMel_CAF1
Location 12,130,738 – 12,130,835
Length 97
Max. P 0.815749
window6707

overview

Window 7

Location 12,130,738 – 12,130,835
Length 97
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 79.11
Mean single sequence MFE -23.80
Consensus MFE -17.72
Energy contribution -17.83
Covariance contribution 0.11
Combinations/Pair 1.32
Mean z-score -1.45
Structure conservation index 0.74
SVM decision value 0.66
SVM RNA-class probability 0.815749
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12130738 97 - 22407834
CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCUCCCUGCUGAUAUUGUUACUCAGCGAUGUGGGCUUUACAA
....----------------------...(((.((((........)))))))...............(((((((((((......((.......))......)))))))))))....... ( -25.60)
>DroSim_CAF1 12089 97 - 1
CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCUCCCUGCUGAUAUUGUUCCUCAGCGAUGUGGGCUUCACAA
....----------------------...(((.((((........)))))))...............(((((((((((......((.......))......)))))))))))....... ( -25.60)
>DroEre_CAF1 11439 97 - 1
CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCAGCGCUUCGCCCGCGUCGCCUCCCUCUUGAUUCUGCUCCUCAGCGAUGUGGGCUUCACAA
....----------------------...((((.(((..........(((..........)))....(((((((((((.......................)))))))))))))))))) ( -23.30)
>DroYak_CAF1 5533 97 - 1
CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCGCCCUCCUCAUUUUGCUCCUCAGCGAUGUGGGCUUUACAA
....----------------------...(((.((((........)))))))...............(((((((((((.......................)))))))))))....... ( -23.30)
>DroAna_CAF1 11136 97 - 1
CUCU----------------------UUUUUGUCGAUUAGAACUUUUCUCAGUUGUCUCAUCGAUUCGCCCGCAUAGCCGCCCUGCUGAUUCUGUUCCUCAGUGACGUGGGCUUCACCA
....----------------------.....((((((.((((((......)))..))).))))))..((((((.((((......))))...(((.....)))....))))))....... ( -23.60)
>DroPer_CAF1 45388 119 - 1
CCCCACCACCACCCCCCCCCCCUCCCUUUUGGUUGAAUAGAACUUCCCCCAUUUGUCGCACCGCUUUGCCCGCAUCGCCGCUCUGCUGAUCUUGUUCCUCAGCGACGUGGCCUUCACCG
..............................(((.(((................(((.(((......)))..)))..(((((..((((((.........))))))..))))).)))))). ( -21.40)
>consensus
CCCU______________________ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCGCCCUGCUGAUUUUGUUCCUCAGCGAUGUGGGCUUCACAA
.............................((((.(((....................((...))...(((((((((((......((.......))......)))))))))))))))))) (-17.72 = -17.83 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:24 2006