Locus 4247

Sequence ID 2L_DroMel_CAF1
Location 12,126,969 – 12,127,065
Length 96
Max. P 0.579953
window6706

overview

Window 6

Location 12,126,969 – 12,127,065
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -39.15
Consensus MFE -23.59
Energy contribution -24.28
Covariance contribution 0.70
Combinations/Pair 1.21
Mean z-score -2.05
Structure conservation index 0.60
SVM decision value 0.09
SVM RNA-class probability 0.579953
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12126969 96 - 22407834
CGGAGGAGGCAUUACUUCUGUGGCUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGUUGGGCCUCCGCCGGCAGUUCACCCACAGCCAU
.((.((((((........(((.((..(((((((.......)))))))..)).)))((((....)))))))))).))(((.((......)).))).. ( -37.90)
>DroPse_CAF1 40782 96 - 1
CGGGGGAGGGUUCAUUUCCUGGCUCGGUGUUGGCCAAAUACCCGCAUUGGCCAGGCCAAUGUGCUGGGCCUCGGCUGGCAGCUCCCCCACGGCAAU
.((((((((((.((((.((((((.((((((.((.......)).))))))))))))..)))).)))..(((......)))..)))))))........ ( -45.80)
>DroSec_CAF1 7309 96 - 1
UGGAGGGGGCAUUACUUCUGUGGCUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGUUGGGCUUCCGCCGGCAGUUCACCCACUGCCAU
.((.((((((........(((.((..(((((((.......)))))))..)).)))((((....)))))))))).))((((((......)))))).. ( -39.20)
>DroEre_CAF1 7536 96 - 1
UGGAGGGGGCAUUACUUCCGUAGCUGGUGUUGGCCAUAUUCCAGCAUUCGCGAUGCCAAUUUGUUGGGCCUCCGCCGGCAGUUCACCCACAGCCAU
.((.((((((........(((.((..(((((((.......)))))))..)).)))((((....)))))))))).))(((.((......)).))).. ( -35.20)
>DroYak_CAF1 1545 96 - 1
AGGAGGGGGCAUUACUUCUGUGGAUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGCUGGGCCUCCGCCGGCAGUUCGCCCACAGCCAU
.((..(((((...(((((.(((((((((....))))...(((((((.(((......)))..)))))))..))))).)).)))..)))).)..)).. ( -34.70)
>DroPer_CAF1 40859 96 - 1
GGGGGGUGGAUUCAUUUCCUGGCUCGGUGUUGGCCAAAUACCCGCAUUGGCCAGGCCAAUGUGCUGGGCCUCGGCUGGCAGCUCCCCCACCGCAAU
((((((.(((......)))......(.(((..(((.....(((((((((((...)))))))))..)).....)))..))).)))))))........ ( -42.10)
>consensus
CGGAGGGGGCAUUACUUCCGUGGCUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGCUGGGCCUCCGCCGGCAGUUCACCCACAGCCAU
.((.((((((........(((.((.((((((((.......)))))))).)).)))(((......))))))))).))(((.(........).))).. (-23.59 = -24.28 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:23 2006